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MOPA: An integrative multi-omics pathway analysis method for measuring omics activity

PloS one, 2023-03, Vol.18 (3), p.e0278272-e0278272

2023

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HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis

BMC bioinformatics, 2019-12, Vol.20 (Suppl 16), p.588-588, Article 588

2019

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MONTI: A Multi-Omics Non-negative Tensor Decomposition Framework for Gene-Level Integrative Analysis

Frontiers in genetics, 2021-09, Vol.12 (1), p.682841-682841

2021

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TimesVector-Web: A Web Service for Analysing Time Course Transcriptome Data with Multiple Conditions

Genes, 2021-12, Vol.13 (1), p.73

2021

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Corrigendum: MONTI: A Multi-Omics Non-Negative Tensor Decomposition Framework for Gene-Level Integrative Analysis

Frontiers in genetics, 2021-10, Vol.12, p.778490-778490

2021

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Development of genetic quality tests for good manufacturing practice-compliant induced pluripotent stem cells and their derivatives

Scientific reports, 2020-03, Vol.10 (1), p.3939, Article 3939

2020

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Exosome from IFN-γ-Primed Induced Pluripotent Stem Cell-Derived Mesenchymal Stem Cells Improved Skin Inflammation and Barrier Function

International journal of molecular sciences, 2023-07, Vol.24 (14), p.11635

2023

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Characterization of a new CCCTC-binding factor binding site as a dual regulator of Epstein-Barr virus latent infection

PLoS pathogens, 2023-01, Vol.19 (1), p.e1011078

2023

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Correction to "A Non-Negative Matrix Factorization Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data"

IEEE access, 2021, Vol.9, p.16567-16567

2021

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A Survey on Computational Methods for Investigation on ncRNA-Disease Association through the Mode of Action Perspective

International journal of molecular sciences, 2022-10, Vol.23 (19), p.11498

2022

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A Non-Negative Matrix Factorization-Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data

IEEE access, 2020, Vol.8, p.42342-42348

2020

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Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice

Frontiers in plant science, 2017-06, Vol.8, p.1044

2017

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DRIM: A Web-Based System for Investigating Drug Response at the Molecular Level by Condition-Specific Multi-Omics Data Integration

Frontiers in genetics, 2020-11, Vol.11, p.564792-564792

2020

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Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data

Briefings in bioinformatics, 2020-01, Vol.21 (1), p.36-46

2020

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TimesVector: a vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes

Bioinformatics (Oxford, England), 2017-12, Vol.33 (23), p.3827-3835

2017

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Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways

Bioinformatics, 2016-06, Vol.32 (12), p.i128-i136

2016

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piClust: A density based piRNA clustering algorithm

Computational biology and chemistry, 2014-06, Vol.50, p.60-67

2014

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Exosome from IFN-γ-Primed Induced Pluripotent Stem Cell-Derived Mesenchymal Stem Cells Improved Skin Inflammation and Barrier Function

International journal of molecular sciences, 2023-07, Vol.24 (14)

2023

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The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature

BMC systems biology, 2018-03, Vol.12 (Suppl 2), p.27-27, Article 27

2018

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Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice

BMC systems biology, 2016-12, Vol.10 (Suppl 4), p.115-115, Article 115

2016

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Novel drought-responsive regulatory coding and non-coding transcripts from Oryza Sativa L

Genes & Genomics, 2016, 38(10), , pp.949-960

2016

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Bio and health informatics meets cloud : BioVLab as an example

Health information science and systems, 2013-02, Vol.1 (1), p.6-6, Article 6

2013

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Measuring single-cell level gene expression stability and variability in healthy and severe COVID-19 patients using Kullback-Leibler divergence

2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2022, p.3818-3820

2022

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IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data

2021 IEEE International Conference on Big Data (Big Data), 2021, p.2791-2800

2021

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HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate Cold and Heat Stress Response Signaling Genes in Arabidopsis

2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018, p.393-398

2018

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MOPA: An integrative multi-omics pathway analysis method for measuring omics activity

HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis

MONTI: A Multi-Omics Non-negative Tensor Decomposition Framework for Gene-Level Integrative Analysis

TimesVector-Web: A Web Service for Analysing Time Course Transcriptome Data with Multiple Conditions

Corrigendum: MONTI: A Multi-Omics Non-Negative Tensor Decomposition Framework for Gene-Level Integrative Analysis

Development of genetic quality tests for good manufacturing practice-compliant induced pluripotent stem cells and their derivatives

Exosome from IFN-γ-Primed Induced Pluripotent Stem Cell-Derived Mesenchymal Stem Cells Improved Skin Inflammation and Barrier Function

Characterization of a new CCCTC-binding factor binding site as a dual regulator of Epstein-Barr virus latent infection

Correction to "A Non-Negative Matrix Factorization Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data"

A Survey on Computational Methods for Investigation on ncRNA-Disease Association through the Mode of Action Perspective

A Non-Negative Matrix Factorization-Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data

Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice

DRIM: A Web-Based System for Investigating Drug Response at the Molecular Level by Condition-Specific Multi-Omics Data Integration

Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data

TimesVector: a vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes

Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways

piClust: A density based piRNA clustering algorithm

Exosome from IFN-γ-Primed Induced Pluripotent Stem Cell-Derived Mesenchymal Stem Cells Improved Skin Inflammation and Barrier Function

The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature

Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice

Novel drought-responsive regulatory coding and non-coding transcripts from Oryza Sativa L

Bio and health informatics meets cloud : BioVLab as an example

Measuring single-cell level gene expression stability and variability in healthy and severe COVID-19 patients using Kullback-Leibler divergence

IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data

HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate Cold and Heat Stress Response Signaling Genes in Arabidopsis

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