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Multifaceted protein–protein interaction prediction based on Siamese residual RCNN

Bioinformatics, 2019-07, Vol.35 (14), p.i305-i314

2019

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Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits

Nature genetics, 2018-07, Vol.50 (7), p.1041-1047

2018

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MetaPheno: A critical evaluation of deep learning and machine learning in metagenome-based disease prediction

Methods (San Diego, Calif.), 2019-08, Vol.166, p.74-82

2019

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Functional disease architectures reveal unique biological role of transposable elements

Nature communications, 2019-09, Vol.10 (1), p.4054-8, Article 4054

2019

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Prediction of microbial communities for urban metagenomics using neural network approach

Human genomics, 2019-10, Vol.13 (Suppl 1), p.47-47, Article 47

2019

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Integrated transcriptomic and proteomic profiling of white spruce stems during the transition from active growth to dormancy

Plant, cell and environment, 2012-04, Vol.35 (4), p.682-701

2012

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Potato, Solanum Tuberosum, Defense Against Colorado Potato Beetle, Leptinotarsa Decemlineata (Say): Microarray Gene Expression Profiling of Potato by Colorado Potato Beetle Regurgitant Treatment of Wounded Leaves

Journal of chemical ecology, 2008-08, Vol.34 (8), p.1013-1025

2008

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Widespread Allelic Heterogeneity in Complex Traits

American journal of human genetics, 2017-05, Vol.100 (5), p.789-802

2017

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Root herbivory: molecular analysis of the maize transcriptome upon infestation by Southern corn rootworm, Diabrotica undecimpunctata howardi

Physiologia plantarum, 2012-04, Vol.144 (4), p.303-319

2012

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Efficient Approach to Correct Read Alignment for Pseudogene Abundance Estimates

IEEE/ACM transactions on computational biology and bioinformatics, 2017-05, Vol.14 (3), p.522-533

2017

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TahcoRoll: fast genomic signature profiling via thinned automaton and rolling hash

Medical Review, 2021-12, Vol.1 (2), p.114-125

2021

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JEDI: circular RNA prediction based on junction encoders and deep interaction among splice sites

Bioinformatics, 2021-07, Vol.37 (Supplement_1), p.i289-i298

2021

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Examining the molecular interaction between potato ( Solanum tuberosum ) and Colorado potato beetle Leptinotarsa decemlineata

Botany, 2008-09, Vol.86 (9), p.1080-1091

2008

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Mutation effect estimation on protein–protein interactions using deep contextualized representation learning

NAR genomics and bioinformatics, 2020-06, Vol.2 (2)

2020

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Molecular events of apical bud formation in white spruce, Picea glauca

Plant, cell and environment, 2011-03, Vol.34 (3), p.480-500

2011

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Bio-JOIE: Joint Representation Learning of Biological Knowledge Bases

Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, 2020, p.1-10

2020

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MARU: Meta-context Aware Random Walks for Heterogeneous Network Representation Learning

Proceedings of the 29th ACM International Conference on Information & Knowledge Management, 2020, p.575-584

2020

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CORALS: Who Are My Potential New Customers? Tapping into the Wisdom of Customers' Decisions

Proceedings of the Twelfth ACM International Conference on Web Search and Data Mining, 2019, p.69-77

2019

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Post-Training Embedding Alignment for Decoupling Enrollment and Runtime Speaker Recognition Models

ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2024, p.10836-10840

2024

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Inferring Microbial Communities for City Scale Metagenomics Using Neural Networks

2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018, p.603-608

2018

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Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mers

Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics, 2017, p.263-272

2017

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Abstract 112: Targeted Metabolomics Profiling of Heart Failure Patients Undergoing Mechanical Circulatory Support

Circulation research, 2014-07, Vol.115 (suppl_1)

2014

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PseudoLasso: leveraging read alignment in homologous regions to correct pseudogene expression estimates via RNASeq

Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, 2014, p.569-578

2014

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The impact of exercise on gene regulation in association with complex trait genetics

Nature communications, 2024-05, Vol.15 (1), p.3346-14, Article 3346

2024

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Multifaceted protein–protein interaction prediction based on Siamese residual RCNN

Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits

MetaPheno: A critical evaluation of deep learning and machine learning in metagenome-based disease prediction

Functional disease architectures reveal unique biological role of transposable elements

Prediction of microbial communities for urban metagenomics using neural network approach

Integrated transcriptomic and proteomic profiling of white spruce stems during the transition from active growth to dormancy

Potato, Solanum Tuberosum, Defense Against Colorado Potato Beetle, Leptinotarsa Decemlineata (Say): Microarray Gene Expression Profiling of Potato by Colorado Potato Beetle Regurgitant Treatment of Wounded Leaves

Widespread Allelic Heterogeneity in Complex Traits

Root herbivory: molecular analysis of the maize transcriptome upon infestation by Southern corn rootworm, Diabrotica undecimpunctata howardi

Efficient Approach to Correct Read Alignment for Pseudogene Abundance Estimates

TahcoRoll: fast genomic signature profiling via thinned automaton and rolling hash

JEDI: circular RNA prediction based on junction encoders and deep interaction among splice sites

Examining the molecular interaction between potato ( Solanum tuberosum ) and Colorado potato beetle Leptinotarsa decemlineata

Mutation effect estimation on protein–protein interactions using deep contextualized representation learning

Molecular events of apical bud formation in white spruce, Picea glauca

Bio-JOIE: Joint Representation Learning of Biological Knowledge Bases

MARU: Meta-context Aware Random Walks for Heterogeneous Network Representation Learning

CORALS: Who Are My Potential New Customers? Tapping into the Wisdom of Customers' Decisions

Post-Training Embedding Alignment for Decoupling Enrollment and Runtime Speaker Recognition Models

Inferring Microbial Communities for City Scale Metagenomics Using Neural Networks

Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mers

Abstract 112: Targeted Metabolomics Profiling of Heart Failure Patients Undergoing Mechanical Circulatory Support

PseudoLasso: leveraging read alignment in homologous regions to correct pseudogene expression estimates via RNASeq

The impact of exercise on gene regulation in association with complex trait genetics

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