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Total RNA sequencing reveals gene expression and microbial alterations shared by oral pre-malignant lesions and cancer

Human genomics, 2023-08, Vol.17 (1), p.72-72, Article 72

2023

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Corrigendum: Malnutrition leads to increased inflammation and expression of tuberculosis risk signatures in recently exposed household contacts of pulmonary tuberculosis

Frontiers in immunology, 2022-10, Vol.13, p.1064883

2022

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Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study

Gates open research, 2022-01, Vol.6, p.48

2022

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Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility

Molecular systems biology, 2016-03, Vol.12 (3), p.860-n/a

2016

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Non-surgical oral hygiene interventions on disease activity of Rheumatoid arthritis patients with periodontitis: A randomized controlled trial

Journal of dental research, dental clinics, dental prospects, 2020-01, Vol.14 (1), p.26-36

2020

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PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets

Cancer Informatics, 2014-01, Vol.2014 (Suppl. 1), p.167-176

2014

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PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets

Cancer informatics, 2015-05, Vol.13 (Suppl 1), p.167-176

2015

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PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

Microbiome, 2014-09, Vol.2 (1), p.33-33, Article 33

2014

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Derivation of a parsimonious Tuberculosis gene signature using the digital NanoString nCounter platform

The Journal of immunology (1950), 2022-05, Vol.208 (1_Supplement), p.172-172.04

2022

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Prevalence and risk factors associated with latent tuberculosis infection among household contacts of smear positive pulmonary tuberculosis patients in South India

Tropical medicine & international health, 2021-12, Vol.26 (12), p.1645-1651

2021

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ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes

Bioinformatics (Oxford, England), 2023-05, Vol.39 (5)

2023

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Detection of Multiple Perturbations in Multi-Omics Biological Networks

Biometrics, 2018-12, Vol.74 (4), p.1351-1361

2018

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Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

BMC bioinformatics, 2014-08, Vol.15 (1), p.262-262, Article 262

2014

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Abstract 17335: Dietary Carbohydrate Quality Affects Plasma Lipid Profile and the Microbiome

Circulation (New York, N.Y.), 2015-11, Vol.132 (Suppl_3 Suppl 3), p.A17335-A17335

2015

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Sex Differences in Behavioral and Brainstem Transcriptomic Neuroadaptations following Neonatal Opioid Exposure in Outbred Mice

eNeuro, 2021-09, Vol.8 (5), p.ENEURO.0143-21.2021

2021

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Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study

Gates open research, 2022, Vol.6, p.48

2022

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Periodontitis and Rheumatoid Arthritis in sub-Saharan Africa, gaps and way forward: a systematic review and meta-analysis

Open journal of stomatology, 2019-10, Vol.9 (10), p.215-226

2019

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Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

BMC bioinformatics, 2013-11, Vol.14 (1), p.337-337, Article 337

2013

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PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets

Cancer informatics, 2014-01, Vol.Suppl. 1 (Suppl. 1), p.167

2014

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Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications

Discovery medicine, 2011-07, Vol.12 (62), p.41-55

2011

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Statistical models for removing microarray batch effects and analyzing genome tiling microarrays

Johnson, William Evan

2007

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Immunopathogenic Overlap and Shared Therapeutic Targets for Covid-19 and Tuberculosis Predicted from Transcriptomic Meta-Analysis

SSRN Electronic Journal

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Interactive Analysis of Single-Cell Data Using Flexible Workflows With SCTK2.0

SSRN Electronic Journal

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Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

Nature communications, 2018-02, Vol.9 (1), p.585-11, Article 585

2018

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Enantio- and Diastereoselective Mannich Reactions of ß‑Dicarbonyls by Second Stage Diastereoconvergent Crystallization

ACS catalysis, 2023-05, Vol.13 (10), p.6518-6524

2023

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Total RNA sequencing reveals gene expression and microbial alterations shared by oral pre-malignant lesions and cancer

Corrigendum: Malnutrition leads to increased inflammation and expression of tuberculosis risk signatures in recently exposed household contacts of pulmonary tuberculosis

Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study

Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility

Non-surgical oral hygiene interventions on disease activity of Rheumatoid arthritis patients with periodontitis: A randomized controlled trial

PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets

PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets

PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

Derivation of a parsimonious Tuberculosis gene signature using the digital NanoString nCounter platform

Prevalence and risk factors associated with latent tuberculosis infection among household contacts of smear positive pulmonary tuberculosis patients in South India

ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes

Detection of Multiple Perturbations in Multi-Omics Biological Networks

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

Abstract 17335: Dietary Carbohydrate Quality Affects Plasma Lipid Profile and the Microbiome

Sex Differences in Behavioral and Brainstem Transcriptomic Neuroadaptations following Neonatal Opioid Exposure in Outbred Mice

Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study

Periodontitis and Rheumatoid Arthritis in sub-Saharan Africa, gaps and way forward: a systematic review and meta-analysis

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets

Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications

Statistical models for removing microarray batch effects and analyzing genome tiling microarrays

Immunopathogenic Overlap and Shared Therapeutic Targets for Covid-19 and Tuberculosis Predicted from Transcriptomic Meta-Analysis

Interactive Analysis of Single-Cell Data Using Flexible Workflows With SCTK2.0

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

Enantio- and Diastereoselective Mannich Reactions of ß‑Dicarbonyls by Second Stage Diastereoconvergent Crystallization

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