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Testing mechanisms of DNA sliding by architectural DNA-binding proteins: dynamics of single wild-type and mutant protein molecules in vitro and in vivo

Nucleic acids research, 2021-09, Vol.49 (15), p.8642-8664

2021

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DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis

PloS one, 2016-03, Vol.11 (3), p.e0150189-e0150189

2016

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High Free-Energy Barrier of 1D Diffusion Along DNA by Architectural DNA-Binding Proteins

Journal of molecular biology, 2018-03, Vol.430 (5), p.655-667

2018

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Cooperative DNA binding by proteins through DNA shape complementarity

Nucleic acids research, 2019-09, Vol.47 (16), p.8874-8887

2019

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Facilitated dissociation of transcription factors from single DNA binding sites

Proceedings of the National Academy of Sciences - PNAS, 2017-04, Vol.114 (16), p.E3251-E3257

2017

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Control of DNA minor groove width and Fis protein binding by the purine 2-amino group

Nucleic acids research, 2013-07, Vol.41 (13), p.6750-6760

2013

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Site-specific DNA Inversion by Serine Recombinases

Microbiology spectrum, 2015-02, Vol.3 (3), p.1-0047-2014

2015

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Modulation of HU-DNA interactions by salt concentration and applied force

Nucleic acids research, 2010-10, Vol.38 (18), p.6176-6185

2010

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Control of Recombination Directionality by the Listeria Phage A118 Protein Gp44 and the Coiled-Coil Motif of Its Serine Integrase

Journal of bacteriology, 2017-06, Vol.199 (11), p.E00019

2017

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DNA-Segment-Facilitated Dissociation of Fis and NHP6A from DNA Detected via Single-Molecule Mechanical Response

Journal of molecular biology, 2015-09, Vol.427 (19), p.3123-3136

2015

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Mechanism of Chromosome Compaction and Looping by the Escherichia coli Nucleoid Protein Fis

Journal of molecular biology, 2006-12, Vol.364 (4), p.777-798

2006

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Control of the Serine Integrase Reaction: Roles of the Coiled-Coil and Helix E Regions in DNA Site Synapsis and Recombination

Journal of bacteriology, 2021-07, Vol.203 (16), p.e0070320-e0070320

2021

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Multiple serine transposase dimers assemble the transposon-end synaptic complex during IS607-family transposition

eLife, 2018-10, Vol.7

2018

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Controlled rotation mechanism of DNA strand exchange by the Hin serine recombinase

Scientific reports, 2016-04, Vol.6 (1), p.23697-23697, Article 23697

2016

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Robust Translation of the Nucleoid Protein Fis Requires a Remote Upstream AU Element and Is Enhanced by RNA Secondary Structure

Journal of Bacteriology, 2012-05, Vol.194 (10), p.2458-2469

2012

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Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions

Molecular microbiology, 2012-12, Vol.86 (6), p.1318-1333

2012

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Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA

Nucleic acids research, 2011-03, Vol.39 (6), p.2249-2259

2011

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The site-specific integration reaction of Listeria phage A118 integrase, a serine recombinase

Mobile DNA, 2013-01, Vol.4 (1), p.2-2, Article 2

2013

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Multiple interfaces between a serine recombinase and an enhancer control site-specific DNA inversion

eLife, 2013-10, Vol.2, p.e01211-e01211

2013

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Recombining DNA by Protein Swivels

Structure (London), 2011-06, Vol.19 (6), p.751-753

2011

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Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein fis

Physical review letters, 2005-11, Vol.95 (20), p.208101.1-208101.4, Article 208101

2005

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Facilitated Dissociation of a Nucleoid Protein from the Bacterial Chromosome

Journal of bacteriology, 2016-06, Vol.198 (12), p.1735-1742

2016

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Controlling tetramer formation, subunit rotation and DNA ligation during Hin-catalyzed DNA inversion

Nucleic acids research, 2015-07, Vol.43 (13), p.6459-6472

2015

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Site-specific DNA Inversion by Serine Recombinases

Microbiology spectrum, 2015-02, Vol.3 (1), p.MDNA3

Johnson, Reid C

2015

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Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly

Proceedings of the National Academy of Sciences - PNAS, 2007-02, Vol.104 (7), p.2109-2114

2007

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Testing mechanisms of DNA sliding by architectural DNA-binding proteins: dynamics of single wild-type and mutant protein molecules in vitro and in vivo

DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis

High Free-Energy Barrier of 1D Diffusion Along DNA by Architectural DNA-Binding Proteins

Cooperative DNA binding by proteins through DNA shape complementarity

Facilitated dissociation of transcription factors from single DNA binding sites

Control of DNA minor groove width and Fis protein binding by the purine 2-amino group

Site-specific DNA Inversion by Serine Recombinases

Modulation of HU-DNA interactions by salt concentration and applied force

Control of Recombination Directionality by the Listeria Phage A118 Protein Gp44 and the Coiled-Coil Motif of Its Serine Integrase

DNA-Segment-Facilitated Dissociation of Fis and NHP6A from DNA Detected via Single-Molecule Mechanical Response

Mechanism of Chromosome Compaction and Looping by the Escherichia coli Nucleoid Protein Fis

Control of the Serine Integrase Reaction: Roles of the Coiled-Coil and Helix E Regions in DNA Site Synapsis and Recombination

Multiple serine transposase dimers assemble the transposon-end synaptic complex during IS607-family transposition

Controlled rotation mechanism of DNA strand exchange by the Hin serine recombinase

Robust Translation of the Nucleoid Protein Fis Requires a Remote Upstream AU Element and Is Enhanced by RNA Secondary Structure

Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions

Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA

The site-specific integration reaction of Listeria phage A118 integrase, a serine recombinase

Multiple interfaces between a serine recombinase and an enhancer control site-specific DNA inversion

Recombining DNA by Protein Swivels

Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein fis

Facilitated Dissociation of a Nucleoid Protein from the Bacterial Chromosome

Controlling tetramer formation, subunit rotation and DNA ligation during Hin-catalyzed DNA inversion

Site-specific DNA Inversion by Serine Recombinases

Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly

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