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Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009969-e1009969

2022

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Tetrahedral Structure or Chains for Liquid Water

Proceedings of the National Academy of Sciences - PNAS, 2006-05, Vol.103 (21), p.7973-7977

2006

Volltextzugriff (PDF)

Cytosolic proteins can exploit membrane localization to trigger functional assembly

PLoS computational biology, 2018-03, Vol.14 (3), p.e1006031-e1006031

2018

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Current Status of the AMOEBA Polarizable Force Field

The journal of physical chemistry. B, 2010-03, Vol.114 (8), p.2549-2564

2010

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Characterization of a Dynamic String Method for the Construction of Transition Pathways in Molecular Reactions

The journal of physical chemistry. B, 2012-07, Vol.116 (29), p.8573-8583

2012

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Nonspecific binding limits the number of proteins in a cell and shapes their interaction networks

Proceedings of the National Academy of Sciences - PNAS, 2011-01, Vol.108 (2), p.603-608

2011

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Structure of the HIV immature lattice allows for essential lattice remodeling within budded virions

eLife, 2023-07, Vol.12

2023

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Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates

The Journal of chemical physics, 2015-08, Vol.143 (8), p.084117-084117

2015

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Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters

Nature communications, 2024-05, Vol.15 (1), p.4060-21, Article 4060

2024

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Stoichiometric balance of protein copy numbers is measurable and functionally significant in a protein-protein interaction network for yeast endocytosis

PLoS computational biology, 2018-03, Vol.14 (3), p.e1006022-e1006022

2018

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Integrating protein copy numbers with interaction networks to quantify stoichiometry in clathrin-mediated endocytosis

Scientific reports, 2022-03, Vol.12 (1), p.5413-5413, Article 5413

2022

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Interface-resolved network of protein-protein interactions

PLoS computational biology, 2013-05, Vol.9 (5), p.e1003065

2013

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Bending membranes along distinct pathways of protein assembly

Biophysical journal, 2023-02, Vol.122 (3), p.3a-3a

Johnson, Margaret E.

2023

Volltextzugriff (PDF)

Free-Propagator Reweighting Integrator for Single-Particle Dynamics in Reaction-Diffusion Models of Heterogeneous Protein-Protein Interaction Systems

Physical review. X, 2014-07, Vol.4 (3), p.031037, Article 031037

2014

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Protein-protein binding selectivity and network topology constrain global and local properties of interface binding networks

Scientific reports, 2017-07, Vol.7 (1), p.5631-14, Article 5631

2017

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Modeling the Self-Assembly of Protein Complexes through a Rigid-Body Rotational Reaction–Diffusion Algorithm

The journal of physical chemistry. B, 2018-12, Vol.122 (49), p.11771-11783

Johnson, Margaret E

2018

Volltextzugriff (PDF)

Modeling membrane reshaping driven by dynamic protein assemblies

Current opinion in structural biology, 2023-02, Vol.78, p.102505-102505, Article 102505

2023

Volltextzugriff (PDF)

Speed limits of protein assembly with reversible membrane localization

The Journal of chemical physics, 2021-05, Vol.154 (19), p.194101-194101

2021

Volltextzugriff (PDF)

Discovering optimal kinetic pathways for self-assembly using automatic differentiation

Proceedings of the National Academy of Sciences - PNAS, 2024-05, Vol.121 (19), p.e2403384121

2024

Volltextzugriff (PDF)

Temporal control by cofactors prevents kinetic trapping in retroviral Gag lattice assembly

Biophysical journal, 2023-08, Vol.122 (15), p.3173-3190

2023

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Thermodynamics and Free Energy Landscape of BAR-Domain Dimerization from Molecular Simulations

The journal of physical chemistry. B, 2021-04, Vol.125 (15), p.3739-3751

2021

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Membrane mechanics regulate the cooperativity of proteins in curvature sensing

Biophysical journal, 2023-02, Vol.122 (3), p.228a-229a

2023

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Secretion‐Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface

Angewandte Chemie International Edition, 2023-09, Vol.62 (37), p.e202305178-n/a

International ed. in English, 2023

Volltextzugriff (PDF)

Representability problems for coarse-grained water potentials

The Journal of chemical physics, 2007-04, Vol.126 (14), p.144509-144509-10

2007

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NERDSS: A Nonequilibrium Simulator for Multibody Self-Assembly at the Cellular Scale

Biophysical journal, 2020-06, Vol.118 (12), p.3026-3040

2020

Volltextzugriff (PDF)

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Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins

Tetrahedral Structure or Chains for Liquid Water

Cytosolic proteins can exploit membrane localization to trigger functional assembly

Current Status of the AMOEBA Polarizable Force Field

Characterization of a Dynamic String Method for the Construction of Transition Pathways in Molecular Reactions

Nonspecific binding limits the number of proteins in a cell and shapes their interaction networks

Structure of the HIV immature lattice allows for essential lattice remodeling within budded virions

Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates

Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters

Stoichiometric balance of protein copy numbers is measurable and functionally significant in a protein-protein interaction network for yeast endocytosis

Integrating protein copy numbers with interaction networks to quantify stoichiometry in clathrin-mediated endocytosis

Interface-resolved network of protein-protein interactions

Bending membranes along distinct pathways of protein assembly

Free-Propagator Reweighting Integrator for Single-Particle Dynamics in Reaction-Diffusion Models of Heterogeneous Protein-Protein Interaction Systems

Protein-protein binding selectivity and network topology constrain global and local properties of interface binding networks

Modeling the Self-Assembly of Protein Complexes through a Rigid-Body Rotational Reaction–Diffusion Algorithm

Modeling membrane reshaping driven by dynamic protein assemblies

Speed limits of protein assembly with reversible membrane localization

Discovering optimal kinetic pathways for self-assembly using automatic differentiation

Temporal control by cofactors prevents kinetic trapping in retroviral Gag lattice assembly

Thermodynamics and Free Energy Landscape of BAR-Domain Dimerization from Molecular Simulations

Membrane mechanics regulate the cooperativity of proteins in curvature sensing

Secretion‐Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface

Representability problems for coarse-grained water potentials

NERDSS: A Nonequilibrium Simulator for Multibody Self-Assembly at the Cellular Scale

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