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Utilizing the state of environmental DNA (eDNA) to incorporate time-scale information into eDNA analysis

Proceedings of the Royal Society. B, Biological sciences, 2023-05, Vol.290 (1999), p.20230979

Jo, Toshiaki S

2023

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Methodological considerations for aqueous environmental RNA collection, preservation, and extraction

Analytical sciences, 2023-10, Vol.39 (10), p.1711-1718

Jo, Toshiaki S.

2023

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Synthesizing the relationships between environmental DNA concentration and freshwater macrophyte abundance: a systematic review and meta-analysis

Hydrobiologia, 2024-04, Vol.851 (7), p.1697-1710

Jo, Toshiaki S.

2024

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Correlation between the number of eDNA particles and species abundance is strengthened by warm temperature: simulation and meta-analysis

Hydrobiologia, 2023-01, Vol.850 (1), p.39-50

Jo, Toshiaki S.

2023

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Validating post-enrichment steps in environmental RNA analysis for improving its availability from water samples

Functional & integrative genomics, 2023-12, Vol.23 (4), p.338-338, Article 338

Jo, Toshiaki S.

2023

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A higher DNA damage rate in aqueous eDNA particles suggests intra‐cellular eDNA degradation in cellular environments

Environmental DNA (Hoboken, N.J.), 2023-03, Vol.5 (2), p.343-349

Jo, Toshiaki S.

2023

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Fine‐tuning the performance of abundance estimation based on environmental DNA (eDNA) focusing on eDNA particle size and marker length

Ecology and evolution, 2022-08, Vol.12 (8), p.n/a

2022

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Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA

Molecular ecology resources, 2017-11, Vol.17 (6), p.e25-e33

2017

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Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes

Environmental DNA (Hoboken, N.J.), 2022-03, Vol.4 (2), p.271-283

2022

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Multiplex real-time PCR enables the simultaneous detection of environmental DNA from freshwater fishes: a case study of three exotic and three threatened native fishes in Japan

Biological invasions, 2020-02, Vol.22 (2), p.455-471

2020

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Estimating shedding and decay rates of environmental nuclear DNA with relation to water temperature and biomass

Environmental DNA (Hoboken, N.J.), 2020-04, Vol.2 (2), p.140-151

2020

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Warm temperature and alkaline conditions accelerate environmental RNA degradation

Environmental DNA (Hoboken, N.J.), 2023-09, Vol.5 (5), p.836-848

2023

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Meta‐analyses of environmental DNA downstream transport and deposition in relation to hydrogeography in riverine environments

Freshwater biology, 2022-08, Vol.67 (8), p.1333-1343

2022

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Larger particle size distribution of environmental RNA compared to environmental DNA: a case study targeting the mitochondrial cytochrome b gene in zebrafish (Danio rerio) using experimental aquariums

Die Naturwissenschaften, 2024-04, Vol.111 (2), p.18-18, Article 18

Jo, Toshiaki S.

2024

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Factors affecting biphasic degradation of eDNA released by Japanese jack mackerel (Trachurus japonicus)

Journal of experimental marine biology and ecology, 2023-11, Vol.568, p.151941, Article 151941

Jo, Toshiaki S.

2023

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Sensitive and efficient surveillance of Japanese giant salamander (Andrias japonicus) distribution in western Japan using multi-copy nuclear DNA marker

Limnology, 2024-04, Vol.25 (2), p.189-198

2024

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Spatiotemporal distribution of Flavobacterium psychrophilum and ayu Plecoglossus altivelis in rivers revealed by environmental DNA analysis

Fisheries science, 2021-05, Vol.87 (3), p.321-330

2021

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Utility of environmental DNA analysis for effective monitoring of invasive fish species in reservoirs

Ecosphere (Washington, D.C), 2021-06, Vol.12 (6), p.n/a

2021

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Valuing the cultural services from urban blue‐space ecosystems in Japanese megacities during the COVID‐19 pandemic

People and nature (Hoboken, N.J.), 2022-10, Vol.4 (5), p.1176-1189

2022

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Can nuclear aquatic environmental DNA be a genetic marker for the accurate estimation of species abundance?

Die Naturwissenschaften, 2022-08, Vol.109 (4), p.38-38, Article 38

2022

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Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses

Molecular ecology resources, 2021-07, Vol.21 (5), p.1490-1503

2021

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Particle Size Distribution of Environmental DNA from the Nuclei of Marine Fish

Environmental science & technology, 2019-08, Vol.53 (16), p.9947-9956

2019

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Selective collection of long fragments of environmental DNA using larger pore size filter

The Science of the total environment, 2020-09, Vol.735, p.139462-139462, Article 139462

2020

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Universal performance of benzalkonium chloride for the preservation of environmental DNA in seawater samples

Limnology and oceanography, methods, 2021-11, Vol.19 (11), p.758-768

2021

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Correction to: Spatiotemporal distribution of Flavobacterium psychrophilum and ayu Plecoglossus altivelis in rivers revealed by environmental DNA analysis

Fisheries science, 2022-07, Vol.88 (4), p.519-519

2022

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Utilizing the state of environmental DNA (eDNA) to incorporate time-scale information into eDNA analysis

Methodological considerations for aqueous environmental RNA collection, preservation, and extraction

Synthesizing the relationships between environmental DNA concentration and freshwater macrophyte abundance: a systematic review and meta-analysis

Correlation between the number of eDNA particles and species abundance is strengthened by warm temperature: simulation and meta-analysis

Validating post-enrichment steps in environmental RNA analysis for improving its availability from water samples

A higher DNA damage rate in aqueous eDNA particles suggests intra‐cellular eDNA degradation in cellular environments

Fine‐tuning the performance of abundance estimation based on environmental DNA (eDNA) focusing on eDNA particle size and marker length

Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA

Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes

Multiplex real-time PCR enables the simultaneous detection of environmental DNA from freshwater fishes: a case study of three exotic and three threatened native fishes in Japan

Estimating shedding and decay rates of environmental nuclear DNA with relation to water temperature and biomass

Warm temperature and alkaline conditions accelerate environmental RNA degradation

Meta‐analyses of environmental DNA downstream transport and deposition in relation to hydrogeography in riverine environments

Larger particle size distribution of environmental RNA compared to environmental DNA: a case study targeting the mitochondrial cytochrome b gene in zebrafish (Danio rerio) using experimental aquariums

Factors affecting biphasic degradation of eDNA released by Japanese jack mackerel (Trachurus japonicus)

Sensitive and efficient surveillance of Japanese giant salamander (Andrias japonicus) distribution in western Japan using multi-copy nuclear DNA marker

Spatiotemporal distribution of Flavobacterium psychrophilum and ayu Plecoglossus altivelis in rivers revealed by environmental DNA analysis

Utility of environmental DNA analysis for effective monitoring of invasive fish species in reservoirs

Valuing the cultural services from urban blue‐space ecosystems in Japanese megacities during the COVID‐19 pandemic

Can nuclear aquatic environmental DNA be a genetic marker for the accurate estimation of species abundance?

Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses

Particle Size Distribution of Environmental DNA from the Nuclei of Marine Fish

Selective collection of long fragments of environmental DNA using larger pore size filter

Universal performance of benzalkonium chloride for the preservation of environmental DNA in seawater samples

Correction to: Spatiotemporal distribution of Flavobacterium psychrophilum and ayu Plecoglossus altivelis in rivers revealed by environmental DNA analysis

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