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RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data

BMC genomics, 2018-02, Vol.19 (1), p.144-144, Article 144

2018

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Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M

Genome Biology, 2022-01, Vol.23 (1), p.36-36, Article 36

2022

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Parallel-META 3: Comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities

Scientific reports, 2017-01, Vol.7 (1), p.40371-40371, Article 40371

2017

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Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function

BMC genomics, 2021-01, Vol.22 (1), p.9-9, Article 9

2021

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Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis

Scientific reports, 2014-06, Vol.4 (1), p.5454-5454, Article 5454

2014

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Method development for cross-study microbiome data mining: Challenges and opportunities

Computational and structural biotechnology journal, 2020-01, Vol.18, p.2075-2080

2020

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Longitudinal Multi-omics and Microbiome Meta-analysis Identify an Asymptomatic Gingival State That Links Gingivitis, Periodontitis, and Aging

mBio, 2021-03, Vol.12 (2)

2021

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Parallel‐Meta Suite: Interactive and rapid microbiome data analysis on multiple platforms

iMeta, 2022-03, Vol.1 (1), p.e1-n/a

2022

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Identifying and Predicting Novelty in Microbiome Studies

mBio, 2018-11, Vol.9 (6)

2018

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A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children

mSystems, 2019-08, Vol.4 (4)

2019

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Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

mSystems, 2020-03, Vol.5 (2)

2020

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Meta-QC-Chain： Comprehensive and Fast Quality Control Method for Metagenomic Data

Genomics, proteomics & bioinformatics, 2014-02, Vol.12 (1), p.52-56

2014

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A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity

mSystems, 2021-08, Vol.6 (4), p.e0039421-e0039421

2021

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Effects of 60 days of 6° head-down bed rest on the composition and function of the human gut microbiota

iScience, 2023-05, Vol.26 (5), p.106615-106615, Article 106615

2023

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Single‐cell rapid identification, in situ viability and vitality profiling, and genome‐based source‐tracking for probiotics products

iMeta, 2023-08, Vol.2 (3), p.e117-n/a

2023

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Microbiome Search Engine 2: a Platform for Taxonomic and Functional Search of Global Microbiomes on the Whole-Microbiome Level

mSystems, 2021-01, Vol.6 (1)

2021

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Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy"

mBio, 2019-08, Vol.10 (4)

2019

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A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity

mSystems, 2021-08, Vol.6 (4)

2021

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Dynamic Meta-Storms enables comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level

Bioinformatics, 2020-04, Vol.36 (7), p.2308-2310

2020

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GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU

Bioinformatics, 2014-04, Vol.30 (7), p.1031-1033

2014

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Comprehensive understanding to the public health risk of environmental microbes via a microbiome-based index

Journal of genetics and genomics, 2022-07, Vol.49 (7), p.685-688

2022

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Hierarchical Meta-Storms enables comprehensive and rapid comparison of microbiome functional profiles on a large scale using hierarchical dissimilarity metrics and parallel computing

Bioinformatics advances, 2021, Vol.1 (1), p.vbab003-vbab003

2021

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Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats

Quantitative biology, 2015-05, Vol.3 (1), p.4-18

2015

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Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats

中国电气与电子工程前沿：英文版, 2015 (1), p.4-18

Xiaoquan Su Xiaojun Wang Gongchao Jing Shi Huang Jian Xu Kang Ning

2015

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Forecasting hand-foot-and-mouth disease cases using wavelet-based SARIMA-NNAR hybrid model

PloS one, 2021-02, Vol.16 (2), p.e0246673-e0246673

2021

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RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data

Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M

Parallel-META 3: Comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities

Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function

Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis

Method development for cross-study microbiome data mining: Challenges and opportunities

Longitudinal Multi-omics and Microbiome Meta-analysis Identify an Asymptomatic Gingival State That Links Gingivitis, Periodontitis, and Aging

Parallel‐Meta Suite: Interactive and rapid microbiome data analysis on multiple platforms

Identifying and Predicting Novelty in Microbiome Studies

A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

Meta-QC-Chain： Comprehensive and Fast Quality Control Method for Metagenomic Data

A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity

Effects of 60 days of 6° head-down bed rest on the composition and function of the human gut microbiota

Single‐cell rapid identification, in situ viability and vitality profiling, and genome‐based source‐tracking for probiotics products

Microbiome Search Engine 2: a Platform for Taxonomic and Functional Search of Global Microbiomes on the Whole-Microbiome Level

Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy"

A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity

Dynamic Meta-Storms enables comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level

GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU

Comprehensive understanding to the public health risk of environmental microbes via a microbiome-based index

Hierarchical Meta-Storms enables comprehensive and rapid comparison of microbiome functional profiles on a large scale using hierarchical dissimilarity metrics and parallel computing

Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats

Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats

Forecasting hand-foot-and-mouth disease cases using wavelet-based SARIMA-NNAR hybrid model

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