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iRegulon: from a gene list to a gene regulatory network using large motif and track collections

PLoS computational biology, 2014-07, Vol.10 (7), p.e1003731-e1003731

2014

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Alteration of the microRNA network during the progression of Alzheimer's disease

EMBO molecular medicine, 2013-10, Vol.5 (10), p.1613-1634

2013

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Gemcitabine Recruits M2-Type Tumor-Associated Macrophages into the Stroma of Pancreatic Cancer

Translational oncology, 2020-03, Vol.13 (3), p.100743-100743, Article 100743

2020

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The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development

Blood, 2009-05, Vol.113 (22), p.5456-5465

2009

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Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

BMC bioinformatics, 2008-01, Vol.9 (1), p.37-37, Article 37

2008

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The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia

Clinical and translational medicine, 2022-10, Vol.12 (10), p.e1053-n/a

2022

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Prognostic relevance of molecular subtypes and master regulators in pancreatic ductal adenocarcinoma

BMC cancer, 2016-08, Vol.16 (1), p.632-632, Article 632

2016

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Chloroplast Electron Chain, ROS Production, and Redox Homeostasis Are Modulated by COS-OGA Elicitation in Tomato ( Solanum lycopersicum ) Leaves

Frontiers in plant science, 2020-12, Vol.11, p.597589-597589

2020

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FUS-ALS hiPSC-derived astrocytes impair human motor units through both gain-of-toxicity and loss-of-support mechanisms

Molecular neurodegeneration, 2023-01, Vol.18 (1), p.5-26, Article 5

2023

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Dysregulation of Macropinocytosis Processes in Glioblastomas May Be Exploited to Increase Intracellular Anti-Cancer Drug Levels: The Example of Temozolomide

Cancers, 2019-03, Vol.11 (3), p.411

2019

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Unraveling networks of co-regulated genes on the sole basis of genome sequences

Nucleic acids research, 2011-08, Vol.39 (15), p.6340-6358

2011

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Unraveling the Molecular Basis of the Dystrophic Process in Limb-Girdle Muscular Dystrophy LGMD-R12 by Differential Gene Expression Profiles in Diseased and Healthy Muscles

Cells (Basel, Switzerland), 2022-04, Vol.11 (9), p.1508

2022

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p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response

Cell cycle (Georgetown, Tex.), 2014-08, Vol.13 (16), p.2572-2586

2014

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Single-cell Transcriptomics Uncover a Novel Role of Myeloid Cells and T-lymphocytes in the Fibrotic Microenvironment in Peyronie’s Disease

European urology focus, 2022-05, Vol.8 (3), p.814-828

2022

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RSAT 2011: regulatory sequence analysis tools

Nucleic acids research, 2011-07, Vol.39 (Web Server issue), p.W86-W91

2011

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RSAT: regulatory sequence analysis tools

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W119-W127

2008

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MP59-01 PEYRONIE'S DISEASE PLAQUE TRANSCRIPTOME-WIDE ANALYSIS USING RNA SEQUENCING REVEALS TARGETABLE SIGNALLING PATHWAYS FOR MEDICAL TREATMENT

The Journal of urology, 2019-04, Vol.201 (Supplement 4)

2019

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iRegulon and i‐cisTarget: Reconstructing Regulatory Networks Using Motif and Track Enrichment

Current Protocols in Bioinformatics, 2015-12, Vol.52 (1), p.2.16.1-2.16.39

2015

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Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences

Nature protocols, 2008-10, Vol.3 (10), p.1589-1603

2008

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NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W444-W451

2008

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Investigating transcriptional regulation: From analysis of complex networks to discovery of cis-regulatory elements

Methods (San Diego, Calif.), 2009-07, Vol.48 (3), p.277-286

2009

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The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia

Clinical and translational medicine, 2022-10, Vol.12

2022

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iRegulon: from a gene list to a gene regulatory network using large motif and track collections

Alteration of the microRNA network during the progression of Alzheimer's disease

Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation

Gemcitabine Recruits M2-Type Tumor-Associated Macrophages into the Stroma of Pancreatic Cancer

The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia

Prognostic relevance of molecular subtypes and master regulators in pancreatic ductal adenocarcinoma

Chloroplast Electron Chain, ROS Production, and Redox Homeostasis Are Modulated by COS-OGA Elicitation in Tomato ( Solanum lycopersicum ) Leaves

FUS-ALS hiPSC-derived astrocytes impair human motor units through both gain-of-toxicity and loss-of-support mechanisms

Dysregulation of Macropinocytosis Processes in Glioblastomas May Be Exploited to Increase Intracellular Anti-Cancer Drug Levels: The Example of Temozolomide

CRISPR/Cas9 screen in human iPSC‐derived cortical neurons identifies NEK6 as a novel disease modifier of C9orf72 poly(PR) toxicity

Unraveling networks of co-regulated genes on the sole basis of genome sequences

Unraveling the Molecular Basis of the Dystrophic Process in Limb-Girdle Muscular Dystrophy LGMD-R12 by Differential Gene Expression Profiles in Diseased and Healthy Muscles

p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response

Single-cell Transcriptomics Uncover a Novel Role of Myeloid Cells and T-lymphocytes in the Fibrotic Microenvironment in Peyronie’s Disease

RSAT 2011: regulatory sequence analysis tools

RSAT: regulatory sequence analysis tools

MP59-01 PEYRONIE'S DISEASE PLAQUE TRANSCRIPTOME-WIDE ANALYSIS USING RNA SEQUENCING REVEALS TARGETABLE SIGNALLING PATHWAYS FOR MEDICAL TREATMENT

iRegulon and i‐cisTarget: Reconstructing Regulatory Networks Using Motif and Track Enrichment

Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

Investigating transcriptional regulation: From analysis of complex networks to discovery of cis-regulatory elements

The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression

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