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Exploring the Gastrointestinal "Nemabiome": Deep Amplicon Sequencing to Quantify the Species Composition of Parasitic Nematode Communities

PloS one, 2015-12, Vol.10 (12), p.e0143559-e0143559

2015

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Kablammo: an interactive, web-based BLAST results visualizer

Bioinformatics, 2015-04, Vol.31 (8), p.1305-1306

2015

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Different structural variant prediction tools yield considerably different results in Caenorhabditis elegans

PloS one, 2022-12, Vol.17 (12), p.e0278424-e0278424

2022

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The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data

PeerJ (San Francisco, CA), 2024-03, Vol.12, p.e17101-e17101, Article e17101

2024

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Does the arthropod microbiota impact the establishment of vector-borne diseases in mammalian hosts?

PLoS pathogens, 2015-04, Vol.11 (4), p.e1004646-e1004646

2015

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A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation

PLoS neglected tropical diseases, 2012-11, Vol.6 (11), p.e1897

2012

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Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew

Mobile DNA, 2019-05, Vol.10 (1), p.24-24, Article 24

2019

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Identification of potential molecular mimicry in pathogen-host interactions

PeerJ (San Francisco, CA), 2023-11, Vol.11, p.e16339-e16339, Article e16339

2023

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Transcriptional patterns of sexual dimorphism and in host developmental programs in the model parasitic nematode Heligmosomoides bakeri

Parasites & vectors, 2023-05, Vol.16 (1), p.171-171, Article 171

2023

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Characterization of the β-tubulin gene family in Ascaris lumbricoides and Ascaris suum and its implication for the molecular detection of benzimidazole resistance

PLoS neglected tropical diseases, 2021-09, Vol.15 (9), p.e0009777

2021

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Patterns of Molecular Evolution in Caenorhabditis Preclude Ancient Origins of Selfing

Genetics (Austin), 2008-04, Vol.178 (4), p.2093-2104

2008

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Trickle infection with Heligmosomoides polygyrus results in decreased worm burdens but increased intestinal inflammation and scarring

Frontiers in immunology, 2022-12, Vol.13, p.1020056

2022

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Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation

Parasites & vectors, 2020-02, Vol.13 (1), p.108-108, Article 108

2020

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prot4EST: translating expressed sequence tags from neglected genomes

BMC bioinformatics, 2004-11, Vol.5 (1), p.187-187, Article 187

2004

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MIPhy: identify and quantify rapidly evolving members of large gene families

PeerJ (San Francisco, CA), 2018-05, Vol.6, p.e4873-e4873, Article e4873

2018

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Genotyping Canadian Cyclospora cayetanensis Isolates to Supplement Cyclosporiasis Outbreak Investigations

Microorganisms (Basel), 2022-02, Vol.10 (2), p.447

2022

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Improved enzyme annotation with EC-specific cutoffs using DETECT v2

Bioinformatics, 2018-10, Vol.34 (19), p.3393-3395

2018

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Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy

PLoS pathogens, 2012-03, Vol.8 (3), p.e1002567-e1002567

2012

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Unravelling parasitic nematode natural history using population genetics

Trends in parasitology, 2013-09, Vol.29 (9), p.438-448

2013

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Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option

BMC genomics, 2016-06, Vol.17 (1), p.476-476, Article 476

2016

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Realizing the promise of parasite genomics

Trends in parasitology, 2014-07, Vol.30 (7), p.321-323

Wasmuth, James D

2014

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IL-33-binding HpARI family homologues with divergent effects in suppressing or enhancing type 2 immune responses

Infection and immunity, 2024-03, Vol.92 (3), p.e0039523

2024

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genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery

Genome biology, 2013-08, Vol.14 (8), p.R88-R88

2013

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Genomic signatures of selection associated with benzimidazole drug treatments in Haemonchus contortus field populations

International journal for parasitology, 2022-09, Vol.52 (10), p.677-689

2022

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Small Intestinal Levels of the Branched Short-Chain Fatty Acid Isovalerate Are Elevated during Infection with Heligmosomoides polygyrus and Can Promote Helminth Fecundity

Infection and immunity, 2021-11, Vol.89 (12), p.e0022521-e0022521

2021

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Exploring the Gastrointestinal "Nemabiome": Deep Amplicon Sequencing to Quantify the Species Composition of Parasitic Nematode Communities

Kablammo: an interactive, web-based BLAST results visualizer

Different structural variant prediction tools yield considerably different results in Caenorhabditis elegans

The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data

Does the arthropod microbiota impact the establishment of vector-borne diseases in mammalian hosts?

A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation

Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew

Identification of potential molecular mimicry in pathogen-host interactions

Transcriptional patterns of sexual dimorphism and in host developmental programs in the model parasitic nematode Heligmosomoides bakeri

Characterization of the β-tubulin gene family in Ascaris lumbricoides and Ascaris suum and its implication for the molecular detection of benzimidazole resistance

Patterns of Molecular Evolution in Caenorhabditis Preclude Ancient Origins of Selfing

Trickle infection with Heligmosomoides polygyrus results in decreased worm burdens but increased intestinal inflammation and scarring

Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation

prot4EST: translating expressed sequence tags from neglected genomes

MIPhy: identify and quantify rapidly evolving members of large gene families

Genotyping Canadian Cyclospora cayetanensis Isolates to Supplement Cyclosporiasis Outbreak Investigations

Improved enzyme annotation with EC-specific cutoffs using DETECT v2

Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy

Unravelling parasitic nematode natural history using population genetics

Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option

Realizing the promise of parasite genomics

IL-33-binding HpARI family homologues with divergent effects in suppressing or enhancing type 2 immune responses

genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery

Genomic signatures of selection associated with benzimidazole drug treatments in Haemonchus contortus field populations

Small Intestinal Levels of the Branched Short-Chain Fatty Acid Isovalerate Are Elevated during Infection with Heligmosomoides polygyrus and Can Promote Helminth Fecundity

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