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APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data

BMC bioinformatics, 2022-09, Vol.23 (Suppl 3), p.396-396, Article 396

2022

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IRE1 plays an essential role in ER stress-mediated aggregation of mutant huntingtin via the inhibition of autophagy flux

Human molecular genetics, 2012-01, Vol.21 (1), p.101-114

2012

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A large-scale comparative study of isoform expressions measured on four platforms

BMC genomics, 2020-03, Vol.21 (1), p.272-272, Article 272

2020

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Alternative Polyadenylation in Human Diseases

Endocrinology and Metabolism, 2017, 32(4), , pp.413-421

2017

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Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis

PLoS computational biology, 2015-12, Vol.11 (12), p.e1004465-e1004465

2015

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Platform-integrated mRNA isoform quantification

Bioinformatics, 2020-04, Vol.36 (8), p.2466-2473

2020

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An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response

Nucleic acids research, 2018-07, Vol.46 (12), p.5996-6008

2018

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SCAMP5 Links Endoplasmic Reticulum Stress to the Accumulation of Expanded Polyglutamine Protein Aggregates via Endocytosis Inhibition

The Journal of biological chemistry, 2009-04, Vol.284 (17), p.11318-11325

2009

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mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control

Nucleic acids research, 2019-11, Vol.47 (19), p.10373-10387

2019

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Neuronal vulnerability of CLN3 deletion to calcium-induced cytotoxicity is mediated by calsenilin

Human molecular genetics, 2007-02, Vol.16 (3), p.317-326

2007

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mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation

Nature communications, 2015-06, Vol.6 (1), p.7218-7218, Article 7218

2015

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Calsenilin Contributes to Neuronal Cell Death in Ischemic Stroke

Brain pathology (Zurich, Switzerland), 2013-07, Vol.23 (4), p.402-412

2013

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Ribo-Proteomics Approach to Profile RNA-Protein and Protein-Protein Interaction Networks

Methods in molecular biology (Clifton, N.J.), 2016-01, Vol.1421, p.165

2016

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Lithium rescues the impaired autophagy process in CbCln3(Δex7/8/Δex7/8) cerebellar cells and reduces neuronal vulnerability to cell death via IMPase inhibition

Journal of neurochemistry, 2011-02, Vol.116 (4), p.659

2011

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Lithium rescues the impaired autophagy process in CbCln3Δex⁷/⁸/Δex⁷/⁸ cerebellar cells and reduces neuronal vulnerability to cell death via IMPase inhibition

Journal of neurochemistry, 2011-02, Vol.116 (4), p.659-668

2011

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Identification of glucose-6-phosphate transporter as a key regulator functioning at the autophagy initiation step

FEBS letters, 2015-07, Vol.589 (16), p.2100-2109

2015

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Calcium Binding of ARC Mediates Regulation of Caspase 8 and Cell Death

Molecular and Cellular Biology, 2004-11, Vol.24 (22), p.9763-9770

2004

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1001 CAT-248 (engineered NK cells expressing CD70 CAR, IL15, and TGFβ DNR) demonstrates in vivo expansion, tumor infiltration, and durable regression of multiple CD70-expressing xenograft tumors

Journal for immunotherapy of cancer, 2023-11, Vol.11 (Suppl 1), p.A1109-A1109

2023

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Characterization of subcellular localization and Ca2+ modulation of calsenilin/DREAM/KChIP3

Neuroreport, 2008-08, Vol.19 (12), p.1193-1197

2008

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Alternative Polyadenylation in Human Diseases

Endocrinology and metabolism (Seoul), 2017-12, Vol.32 (4), p.413

2017

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Protection of Cardiomyocytes from Ischemic/Hypoxic Cell Death via Drbp1 and pMe2GlyDH in Cardio-specific ARC Transgenic Mice

The Journal of biological chemistry, 2008-11, Vol.283 (45), p.30707-30714

2008

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Contribution of presenilin/γ-secretase to calsenilin-mediated apoptosis

Biochemical and biophysical research communications, 2003-05, Vol.305 (1), p.62-66

2003

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TMEM9 activates Rab9-dependent alternative autophagy through interaction with Beclin1

Cellular and molecular life sciences : CMLS, 2024-12, Vol.81 (1), p.322, Article 322

2024

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Down-regulation of ARC contributes to vulnerability of hippocampal neurons to ischemia/hypoxia

FEBS letters, 2003-05, Vol.543 (1), p.170-173

2003

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APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data

IRE1 plays an essential role in ER stress-mediated aggregation of mutant huntingtin via the inhibition of autophagy flux

A large-scale comparative study of isoform expressions measured on four platforms

Alternative Polyadenylation in Human Diseases

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis

Platform-integrated mRNA isoform quantification

An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response

SCAMP5 Links Endoplasmic Reticulum Stress to the Accumulation of Expanded Polyglutamine Protein Aggregates via Endocytosis Inhibition

mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control

Neuronal vulnerability of CLN3 deletion to calcium-induced cytotoxicity is mediated by calsenilin

mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation

Evolution of the clinical-stage hyperactive TcBuster transposase as a platform for robust non-viral production of adoptive cellular therapies

Calsenilin Contributes to Neuronal Cell Death in Ischemic Stroke

Ribo-Proteomics Approach to Profile RNA-Protein and Protein-Protein Interaction Networks

Lithium rescues the impaired autophagy process in CbCln3(Δex7/8/Δex7/8) cerebellar cells and reduces neuronal vulnerability to cell death via IMPase inhibition

Lithium rescues the impaired autophagy process in CbCln3Δex⁷/⁸/Δex⁷/⁸ cerebellar cells and reduces neuronal vulnerability to cell death via IMPase inhibition

Identification of glucose-6-phosphate transporter as a key regulator functioning at the autophagy initiation step

Calcium Binding of ARC Mediates Regulation of Caspase 8 and Cell Death

1001 CAT-248 (engineered NK cells expressing CD70 CAR, IL15, and TGFβ DNR) demonstrates in vivo expansion, tumor infiltration, and durable regression of multiple CD70-expressing xenograft tumors

Characterization of subcellular localization and Ca2+ modulation of calsenilin/DREAM/KChIP3

Alternative Polyadenylation in Human Diseases

Protection of Cardiomyocytes from Ischemic/Hypoxic Cell Death via Drbp1 and pMe2GlyDH in Cardio-specific ARC Transgenic Mice

Contribution of presenilin/γ-secretase to calsenilin-mediated apoptosis

TMEM9 activates Rab9-dependent alternative autophagy through interaction with Beclin1

Down-regulation of ARC contributes to vulnerability of hippocampal neurons to ischemia/hypoxia

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