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What Has Genomics Taught An Evolutionary Biologist?

Genomics, proteomics & bioinformatics, 2023-02, Vol.21 (1), p.1-12

Zhang, Jianzhi

2023

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Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys

Nature genetics, 2006-07, Vol.38 (7), p.819-823

Zhang, Jianzhi

2006

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Mammalian circular RNAs result largely from splicing errors

Cell reports (Cambridge), 2021-07, Vol.36 (4), p.109439-109439, Article 109439

2021

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Epistasis Analysis Goes Genome-Wide

PLoS genetics, 2017-02, Vol.13 (2), p.e1006558-e1006558

2017

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Determinants of the rate of protein sequence evolution

Nature reviews. Genetics, 2015-07, Vol.16 (7), p.409-420

2015

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Diet shapes the evolution of the vertebrate bitter taste receptor gene repertoire

Molecular biology and evolution, 2014-02, Vol.31 (2), p.303-309

2014

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Stop-codon read-through arises largely from molecular errors and is generally nonadaptive

PLoS genetics, 2019-05, Vol.15 (5), p.e1008141

2019

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The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive

Nature communications, 2019-11, Vol.10 (1), p.5411-10, Article 5411

2019

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The loci of environmental adaptation in a model eukaryote

Nature communications, 2024-07, Vol.15 (1), p.5672-15, Article 5672

2024

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Human coding RNA editing is generally nonadaptive

Proceedings of the National Academy of Sciences - PNAS, 2014-03, Vol.111 (10), p.3769-3774

2014

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Evolutionary adaptations to new environments generally reverse plastic phenotypic changes

Nature communications, 2018-01, Vol.9 (1), p.350-11, Article 350

2018

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The rate and molecular spectrum of mutation are selectively maintained in yeast

Nature communications, 2021-06, Vol.12 (1), p.4044-11, Article 4044

2021

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Impact of gene expression noise on organismal fitness and the efficacy of natural selection

Proceedings of the National Academy of Sciences - PNAS, 2011-04, Vol.108 (16), p.E67-E76

2011

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Why do hubs tend to be essential in protein networks?

PLoS genetics, 2006-06, Vol.2 (6), p.e88-e88

2006

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Author Correction: The rate and molecular spectrum of mutation are selectively maintained in yeast

Nature communications, 2023-04, Vol.14 (1), p.1876-1876, Article 1876

2023

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Mammalian Alternative Translation Initiation Is Mostly Nonadaptive

Molecular biology and evolution, 2020-07, Vol.37 (7), p.2015-2028

2020

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Testing the adaptive hypothesis of lagging-strand encoding in bacterial genomes

Nature communications, 2022-05, Vol.13 (1), p.2628-2628, Article 2628

2022

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Morphological and molecular convergences in mammalian phylogenetics

Nature communications, 2016-09, Vol.7 (1), p.12758-12758, Article 12758

2016

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Environment-dependent pleiotropic effects of mutations on the maximum growth rate r and carrying capacity K of population growth

PLoS biology, 2019-01, Vol.17 (1), p.e3000121-e3000121

2019

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Author Correction: The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive

Nature communications, 2021-07, Vol.12 (1), p.4200-4200, Article 4200

2021

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The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms

Nature reviews. Genetics, 2011-03, Vol.12 (3), p.204-213

2011

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Phylostratigraphic bias creates spurious patterns of genome evolution

Molecular biology and evolution, 2015-01, Vol.32 (1), p.258-267

2015

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The fitness landscape of a tRNA gene

Science (American Association for the Advancement of Science), 2016-05, Vol.352 (6287), p.837-840

2016

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Chance promoter activities illuminate the origins of eukaryotic intergenic transcriptions

Nature communications, 2023-04, Vol.14 (1), p.1826-1826, Article 1826

2023

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CYP6 P450 enzymes and ACE-1 duplication produce extreme and multiple insecticide resistance in the malaria mosquito Anopheles gambiae

PLoS genetics, 2014-03, Vol.10 (3), p.e1004236

2014

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What Has Genomics Taught An Evolutionary Biologist?

Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys

Mammalian circular RNAs result largely from splicing errors

Epistasis Analysis Goes Genome-Wide

Determinants of the rate of protein sequence evolution

Diet shapes the evolution of the vertebrate bitter taste receptor gene repertoire

Stop-codon read-through arises largely from molecular errors and is generally nonadaptive

The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive

The loci of environmental adaptation in a model eukaryote

Human coding RNA editing is generally nonadaptive

Evolutionary adaptations to new environments generally reverse plastic phenotypic changes

The rate and molecular spectrum of mutation are selectively maintained in yeast

Impact of gene expression noise on organismal fitness and the efficacy of natural selection

Why do hubs tend to be essential in protein networks?

Author Correction: The rate and molecular spectrum of mutation are selectively maintained in yeast

Mammalian Alternative Translation Initiation Is Mostly Nonadaptive

Testing the adaptive hypothesis of lagging-strand encoding in bacterial genomes

Morphological and molecular convergences in mammalian phylogenetics

Environment-dependent pleiotropic effects of mutations on the maximum growth rate r and carrying capacity K of population growth

Author Correction: The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive

The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms

Phylostratigraphic bias creates spurious patterns of genome evolution

The fitness landscape of a tRNA gene

Chance promoter activities illuminate the origins of eukaryotic intergenic transcriptions

CYP6 P450 enzymes and ACE-1 duplication produce extreme and multiple insecticide resistance in the malaria mosquito Anopheles gambiae

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