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Introduction to Data Science: Data Analysis and Prediction Algorithms With R

Topic, Martina

2022

Volltextzugriff (PDF)

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

Nature communications, 2017-12, Vol.8 (1), p.1784-10, Article 1784

2017

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Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

Genome Biology, 2019-12, Vol.20 (1), p.295-295, Article 295

2019

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Robust decomposition of cell type mixtures in spatial transcriptomics

Nature biotechnology, 2022-04, Vol.40 (4), p.517-526

2022

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A framework for oligonucleotide microarray preprocessing

Bioinformatics, 2010-10, Vol.26 (19), p.2363-2367

2010

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Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

Bioinformatics, 2014-05, Vol.30 (10), p.1363-1369

2014

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Mortality in Puerto Rico after Hurricane Maria

The New England journal of medicine, 2018-07, Vol.379 (2), p.162-170

2018

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Accounting for cellular heterogeneity is critical in epigenome-wide association studies

Genome biology, 2014-02, Vol.15 (2), p.R31-R31

2014

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Stochastic Epigenetic Variation as a Driving Force of Development Evolutionary Adaptation, and Disease

Proceedings of the National Academy of Sciences - PNAS, 2010-01, Vol.107 (suppl 1), p.1757-1764

2010

Volltextzugriff (PDF)

Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing

Biostatistics (Oxford, England), 2019-07, Vol.20 (3), p.367-383

2019

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Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers

Genome Biology, 2020-07, Vol.21 (1), p.160-160, Article 160

2020

Volltextzugriff (PDF)

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Genome biology, 2012-10, Vol.13 (10), p.R83-R83

2012

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Tackling the widespread and critical impact of batch effects in high-throughput data

Nature reviews. Genetics, 2010-10, Vol.11 (10), p.733

2010

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Increased methylation variation in epigenetic domains across cancer types

Nature genetics, 2011-08, Vol.43 (8), p.768-775

2011

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methylCC: technology-independent estimation of cell type composition using differentially methylated regions

Genome Biology, 2019-11, Vol.20 (1), p.261-261, Article 261

2019

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Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells

Nature genetics, 2009-02, Vol.41 (2), p.246-250

2009

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

Nature genetics, 2009-02, Vol.41 (2), p.178-186

2009

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MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

Genome biology, 2014-01, Vol.15 (12), p.554-554, Article 554

2014

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affy—analysis of Affymetrix GeneChip data at the probe level

Bioinformatics, 2004-02, Vol.20 (3), p.307-315

2004

Volltextzugriff (PDF)

Detection of allele-specific expression in spatial transcriptomics with spASE

Genome Biology, 2024-07, Vol.25 (1), p.1-22, Article 180

2024

Volltextzugriff (PDF)

DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases

Science translational medicine, 2013-01, Vol.5 (169), p.169ra10

2013

Volltextzugriff (PDF)

Nucleocytosolic Acetyl-Coenzyme A Synthetase Is Required for Histone Acetylation and Global Transcription

Molecular cell, 2006-07, Vol.23 (2), p.207-217

2006

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Comprehensive high-throughput arrays for relative methylation (CHARM)

Genome Research, 2008-05, Vol.18 (5), p.780-790

2008

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Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin

Genome Biology, 2015-04, Vol.16 (1), p.80-80, Article 80

2015

Volltextzugriff (PDF)

Differential richness inference for 16S rRNA marker gene surveys

Genome Biology, 2022-08, Vol.23 (1), p.166-25, Article 166

2022

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Introduction to Data Science: Data Analysis and Prediction Algorithms With R

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

Robust decomposition of cell type mixtures in spatial transcriptomics

A framework for oligonucleotide microarray preprocessing

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

Mortality in Puerto Rico after Hurricane Maria

Accounting for cellular heterogeneity is critical in epigenome-wide association studies

Stochastic Epigenetic Variation as a Driving Force of Development Evolutionary Adaptation, and Disease

Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing

Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Tackling the widespread and critical impact of batch effects in high-throughput data

Increased methylation variation in epigenetic domains across cancer types

methylCC: technology-independent estimation of cell type composition using differentially methylated regions

Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

affy—analysis of Affymetrix GeneChip data at the probe level

Detection of allele-specific expression in spatial transcriptomics with spASE

DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases

Nucleocytosolic Acetyl-Coenzyme A Synthetase Is Required for Histone Acetylation and Global Transcription

Comprehensive high-throughput arrays for relative methylation (CHARM)

Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin

Differential richness inference for 16S rRNA marker gene surveys

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