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Integrating Hi-C links with assembly graphs for chromosome-scale assembly

PLoS computational biology, 2019-08, Vol.15 (8), p.e1007273

2019

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Ferroptosis and autophagy induced cell death occur independently after siramesine and lapatinib treatment in breast cancer cells

PloS one, 2017-08, Vol.12 (8), p.e0182921-e0182921

2017

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SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006616-e1006616

2018

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An attention based deep learning model of clinical events in the intensive care unit

PloS one, 2019-02, Vol.14 (2), p.e0211057

2019

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LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006865-e1006865

2019

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Modulation of the osteosarcoma expression phenotype by microRNAs

PloS one, 2012-10, Vol.7 (10), p.e48086-e48086

2012

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Adaptive multi-view multi-label learning for identifying disease-associated candidate miRNAs

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006931-e1006931

2019

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Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics

PloS one, 2018-03, Vol.13 (3), p.e0193799-e0193799

2018

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Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data

PLoS computational biology, 2020-09, Vol.16 (9), p.e1008173-e1008173

2020

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Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006826-e1006826

2019

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Comprehensively benchmarking applications for detecting copy number variation

PLoS computational biology, 2019-05, Vol.15 (5), p.e1007069-e1007069

2019

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miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts

PLoS computational biology, 2018-07, Vol.14 (7), p.e1006185-e1006185

2018

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Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006617-e1006617

2018

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Quercetin potentializes the respective cytotoxic activity of gemcitabine or doxorubicin on 3D culture of AsPC-1 or HepG2 cells, through the inhibition of HIF-1α and MDR1

PloS one, 2020-10, Vol.15 (10), p.e0240676

2020

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Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares

PLoS computational biology, 2019-05, Vol.15 (5), p.e1006976-e1006976

2019

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Spatial Transcriptomics of Nematodes Identifies Sperm Cells as a Source of Genomic Novelty and Rapid Evolution

Molecular biology and evolution, 2021-01, Vol.38 (1), p.229-243

2021

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GenoVi, an open-source automated circular genome visualizer for bacteria and archaea

PLoS computational biology, 2023-04, Vol.19 (4), p.e1010998-e1010998

2023

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FoxM1 Promotes Stemness and Radio-Resistance of Glioblastoma by Regulating the Master Stem Cell Regulator Sox2

PloS one, 2015-10, Vol.10 (10), p.e0137703-e0137703

2015

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The PD-1/B7-H1 pathway modulates the natural killer cells versus mouse glioma stem cells

PloS one, 2015-08, Vol.10 (8), p.e0134715-e0134715

2015

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Microvesicles derived from human umbilical cord Wharton's jelly mesenchymal stem cells attenuate bladder tumor cell growth in vitro and in vivo

PloS one, 2013-04, Vol.8 (4), p.e61366-e61366

2013

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Anticancer effects of a non-narcotic opium alkaloid medicine, papaverine, in human glioblastoma cells

PloS one, 2019-05, Vol.14 (5), p.e0216358-e0216358

2019

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Glioma IL13Rα2 is associated with mesenchymal signature gene expression and poor patient prognosis

PloS one, 2013-10, Vol.8 (10), p.e77769-e77769

2013

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Imputation for transcription factor binding predictions based on deep learning

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005403-e1005403

2017

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Expression and prognostic impact of matrix metalloproteinase-2 (MMP-2) in astrocytomas

PloS one, 2017-02, Vol.12 (2), p.e0172234-e0172234

2017

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Inhibitory effect of ginsenoside Rg3 on cancer stemness and mesenchymal transition in breast cancer via regulation of myeloid-derived suppressor cells

PloS one, 2020-10, Vol.15 (10), p.e0240533-e0240533

2020

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Integrating Hi-C links with assembly graphs for chromosome-scale assembly

Ferroptosis and autophagy induced cell death occur independently after siramesine and lapatinib treatment in breast cancer cells

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

An attention based deep learning model of clinical events in the intensive care unit

LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities

Modulation of the osteosarcoma expression phenotype by microRNAs

Adaptive multi-view multi-label learning for identifying disease-associated candidate miRNAs

Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas

Comprehensively benchmarking applications for detecting copy number variation

miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts

Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci

Quercetin potentializes the respective cytotoxic activity of gemcitabine or doxorubicin on 3D culture of AsPC-1 or HepG2 cells, through the inhibition of HIF-1α and MDR1

Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares

Spatial Transcriptomics of Nematodes Identifies Sperm Cells as a Source of Genomic Novelty and Rapid Evolution

GenoVi, an open-source automated circular genome visualizer for bacteria and archaea

FoxM1 Promotes Stemness and Radio-Resistance of Glioblastoma by Regulating the Master Stem Cell Regulator Sox2

The PD-1/B7-H1 pathway modulates the natural killer cells versus mouse glioma stem cells

Microvesicles derived from human umbilical cord Wharton's jelly mesenchymal stem cells attenuate bladder tumor cell growth in vitro and in vivo

Anticancer effects of a non-narcotic opium alkaloid medicine, papaverine, in human glioblastoma cells

Glioma IL13Rα2 is associated with mesenchymal signature gene expression and poor patient prognosis

Imputation for transcription factor binding predictions based on deep learning

Expression and prognostic impact of matrix metalloproteinase-2 (MMP-2) in astrocytomas

Inhibitory effect of ginsenoside Rg3 on cancer stemness and mesenchymal transition in breast cancer via regulation of myeloid-derived suppressor cells

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