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Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomolecules

Biophysical reviews, 2022-12, Vol.14 (6), p.1303-1314

2022

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Structural Fluctuations of Aromatic Residues in an Apo-Form Reveal Cryptic Binding Sites: Implications for Fragment-Based Drug Design

The journal of physical chemistry. B, 2020-11, Vol.124 (45), p.9977-9986

2020

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Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

Journal of chemical theory and computation, 2019-04, Vol.15 (4), p.2597-2607

2019

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Enhanced conformational sampling to visualize a free-energy landscape of protein complex formation

Biochemical journal, 2016-06, Vol.473 (12), p.1651-1662

2016

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Asymmetric dynamics of dimeric SARS-CoV-2 and SARS-CoV main proteases in an apo form: Molecular dynamics study on fluctuations of active site, catalytic dyad, and hydration water

BBA advances, 2021, Vol.1, p.100016-100016, Article 100016

2021

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Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule

Scientific reports, 2022-08, Vol.12 (1), p.13792-13792, Article 13792

2022

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Continuum mechanical parameterisation of cytoplasmic dynein from atomistic simulation

Methods (San Diego, Calif.), 2021-01, Vol.185, p.39-48

2021

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Dissociation Rate Calculation via Constant-Force Steered Molecular Dynamics Simulation

Journal of chemical information and modeling, 2023-06, Vol.63 (11), p.3369-3376

2023

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WKB and “cubic-WKB” methods as an adiabatic approximation

Modern physics letters A, 2019-10, Vol.34 (31), p.1950250

Iida, Shinji

2019

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Vous êtes le roi du monde ! » Les employés de bureau et l’évolution de leur image au Japon

Hermès (Paris, France : 1988), 2019, Vol.n° 83 (1), p.98

Iida, Shinji

2019

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Second moments of work and heat for a single-particle stochastic heat engine in a breathing harmonic potential

Progress of theoretical and experimental physics, 2022-04, Vol.2022 (4)

2022

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Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling

Journal of computational chemistry, 2016-12, Vol.37 (31), p.2687-2700

2016

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Hazard Maps and Risk Communication for Water-related Disaster Risk Reduction and Resilience

The Japanese Journal of Real Estate Sciences, 2022-06, Vol.36 (1), p.71-77

IIDA, Shinji

2022

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Multimodal Structural Distribution of the p53 C-terminal Domain Upon Binding to S100B via a Generalised Ensemble Method: From Disorder to Extra-Disorder

Journal of chemical theory and computation, 2019-03

2019

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1P049 Free-energy landscape of the C-terminal negative regulatory domain of p53(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri, 2014/08/20, Vol.54(supplement1-2), pp.S149

2014

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1P049 p53C末端の負の制御ドメインに関する自由エネルギー地形(01C. 蛋白質 : 物性,ポスター,第52回日本生物物理学会年会(2014年度))

生物物理, 2014/08/20, Vol.54(supplement1-2), pp.S149

2014

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A new stochastic cellular automaton model on traffic flow and its jamming phase transition

Journal of physics. A, Mathematical and general, 2006-12, Vol.39 (50), p.15327-15339

2006

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Dynamical meaning of quantum adiabatic phase: the case of a noncanonical system

Physical review letters, 1986-03, Vol.56 (10), p.1003-1006

1986

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Development of Paints and Coating Process for Preservation of Environment. The Modification and Application of Slovent-free Technics about Anticorrosive Coatings

Hyōmen gijutsu, 1997, Vol.48 (8), p.755-759

IIDA, Shinji

1997

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Protocol for laparoscopic cholecystectomy: Is it rocket science?

World journal of gastroenterology : WJG, 2016-12, Vol.22 (47), p.10287-10303

2016

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Role of portal and splenic vein shunts and impaired hepatic extraction in the elevated serum bile acids in liver cirrhosis

Gastroenterology (New York, N.Y. 1943), 1984-03, Vol.86 (3), p.514-520

1984

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The effect of chronic habitual alcohol intake on the development of liver cirrhosis and hepatocellular carcinoma: Relation to hepatitis B surface antigen carriage

Cancer, 1982-02, Vol.49 (4), p.672-677

1982

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Zero-Low VOC Systems in Anti-corrosive Coating

Zairyo-to-Kankyo, 1999/09/15, Vol.48(9), pp.550-556

Iida, Shinji

1999

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Experimental study on improvement of transient stability with braking resistor

Electronics and communications in Japan, 2008-08, Vol.91 (8), p.11-19

2008

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Effect of Method for Adding Magnetite in Preparation of Composite Particles by Suspension Polymerization

Kagaku kōgaku ronbunshū, 1996, Vol.22 (6), p.1384-1390

1996

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Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomolecules

Structural Fluctuations of Aromatic Residues in an Apo-Form Reveal Cryptic Binding Sites: Implications for Fragment-Based Drug Design

Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder

Enhanced conformational sampling to visualize a free-energy landscape of protein complex formation

Asymmetric dynamics of dimeric SARS-CoV-2 and SARS-CoV main proteases in an apo form: Molecular dynamics study on fluctuations of active site, catalytic dyad, and hydration water

Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule

Continuum mechanical parameterisation of cytoplasmic dynein from atomistic simulation

Dissociation Rate Calculation via Constant-Force Steered Molecular Dynamics Simulation

WKB and “cubic-WKB” methods as an adiabatic approximation

Vous êtes le roi du monde ! » Les employés de bureau et l’évolution de leur image au Japon

Second moments of work and heat for a single-particle stochastic heat engine in a breathing harmonic potential

Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling

Hazard Maps and Risk Communication for Water-related Disaster Risk Reduction and Resilience

Multimodal Structural Distribution of the p53 C-terminal Domain Upon Binding to S100B via a Generalised Ensemble Method: From Disorder to Extra-Disorder

1P049 Free-energy landscape of the C-terminal negative regulatory domain of p53(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

1P049 p53C末端の負の制御ドメインに関する自由エネルギー地形(01C. 蛋白質 : 物性,ポスター,第52回日本生物物理学会年会(2014年度))

A new stochastic cellular automaton model on traffic flow and its jamming phase transition

Dynamical meaning of quantum adiabatic phase: the case of a noncanonical system

Development of Paints and Coating Process for Preservation of Environment. The Modification and Application of Slovent-free Technics about Anticorrosive Coatings

Protocol for laparoscopic cholecystectomy: Is it rocket science?

Role of portal and splenic vein shunts and impaired hepatic extraction in the elevated serum bile acids in liver cirrhosis

The effect of chronic habitual alcohol intake on the development of liver cirrhosis and hepatocellular carcinoma: Relation to hepatitis B surface antigen carriage

Zero-Low VOC Systems in Anti-corrosive Coating

Experimental study on improvement of transient stability with braking resistor

Effect of Method for Adding Magnetite in Preparation of Composite Particles by Suspension Polymerization

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