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Peaks cloaked in the mist: the landscape of mammalian replication origins

The Journal of cell biology, 2015-01, Vol.208 (2), p.147-160

Hyrien, Olivier

2015

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How MCM loading and spreading specify eukaryotic DNA replication initiation sites

F1000 research, 2016, Vol.5, p.2063

Hyrien, Olivier

2016

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Replication landscape of the human genome

Nature communications, 2016-01, Vol.7 (1), p.10208-10208, Article 10208

2016

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Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse

Cell, 2018-08, Vol.174 (5), p.1127-1142.e19

2018

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Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths

PLoS computational biology, 2023-05, Vol.19 (5), p.e1011138-e1011138

2023

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Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones

eLife, 2021-03, Vol.10

2021

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Prospectively defined patterns of APOBEC3A mutagenesis are prevalent in human cancers

Cell reports (Cambridge), 2022-03, Vol.38 (12), p.110555-110555, Article 110555

2022

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FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

Genome Biology, 2020-05, Vol.21 (1), p.125-25, Article 125

2020

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Genome-wide mapping of individual replication fork velocities using nanopore sequencing

Nature communications, 2022-06, Vol.13 (1), p.3295-3295, Article 3295

2022

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Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

Genome research, 2010-04, Vol.20 (4), p.447-457

2010

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Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome

PLoS computational biology, 2011-12, Vol.7 (12), p.e1002322-e1002322

2011

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Cdc45 Is a Critical Effector of Myc-Dependent DNA Replication Stress

Cell reports (Cambridge), 2013-05, Vol.3 (5), p.1629-1639

2013

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ATR/Chk1 pathway is essential for resumption of DNA synthesis and cell survival in UV-irradiated XP variant cells

Human molecular genetics, 2010-05, Vol.19 (9), p.1690-1701

2010

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Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem

BioEssays, 2003-02, Vol.25 (2), p.116-125

2003

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Universal temporal profile of replication origin activation in eukaryotes

PloS one, 2009-06, Vol.4 (6), p.e5899-e5899

2009

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Organization of DNA Replication Origin Firing in Xenopus Egg Extracts: The Role of Intra-S Checkpoint

Genes, 2021-08, Vol.12 (8), p.1224

2021

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Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines

PLoS computational biology, 2012-04, Vol.8 (4), p.e1002443-e1002443

2012

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Y RNA functions at the initiation step of mammalian chromosomal DNA replication

Journal of cell science, 2009-08, Vol.122 (16), p.2836-2845

2009

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A dynamic stochastic model for DNA replication initiation in early embryos

PloS one, 2008-08, Vol.3 (8), p.e2919-e2919

2008

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From Simple Bacterial and Archaeal Replicons to Replication N/U-Domains

Journal of molecular biology, 2013-11, Vol.425 (23), p.4673-4689

2013

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A simple and optimized method of producing silanized surfaces for FISH and replication mapping on combed DNA fibers

BioTechniques, 2008-12, Vol.45 (6), p.649-658

2008

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High‐Throughput Optical Mapping of Replicating DNA

Small methods, 2018-09, Vol.2 (9), p.n/a

2018

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Replication-fork stalling and processing at a single psoralen interstrand crosslink in Xenopus egg extracts

PloS one, 2011-04, Vol.6 (4), p.e18554

2011

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Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure

EMBO reports, 2005-08, Vol.6 (8), p.729-735

2005

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From the chromatin interaction network to the organization of the human genome into replication N/U-domains

New journal of physics, 2014-11, Vol.16 (11), p.1-18

2014

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Peaks cloaked in the mist: the landscape of mammalian replication origins

How MCM loading and spreading specify eukaryotic DNA replication initiation sites

Replication landscape of the human genome

Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse

Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths

Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones

Prospectively defined patterns of APOBEC3A mutagenesis are prevalent in human cancers

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

Genome-wide mapping of individual replication fork velocities using nanopore sequencing

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome

Cdc45 Is a Critical Effector of Myc-Dependent DNA Replication Stress

ATR/Chk1 pathway is essential for resumption of DNA synthesis and cell survival in UV-irradiated XP variant cells

Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem

Universal temporal profile of replication origin activation in eukaryotes

Organization of DNA Replication Origin Firing in Xenopus Egg Extracts: The Role of Intra-S Checkpoint

Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines

Y RNA functions at the initiation step of mammalian chromosomal DNA replication

A dynamic stochastic model for DNA replication initiation in early embryos

From Simple Bacterial and Archaeal Replicons to Replication N/U-Domains

A simple and optimized method of producing silanized surfaces for FISH and replication mapping on combed DNA fibers

High‐Throughput Optical Mapping of Replicating DNA

Replication-fork stalling and processing at a single psoralen interstrand crosslink in Xenopus egg extracts

Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure

From the chromatin interaction network to the organization of the human genome into replication N/U-domains

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