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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

Science (American Association for the Advancement of Science), 2016-07, Vol.353 (6294), p.78-82

2016

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Resolution of Cell Fate Decisions Revealed by Single-Cell Gene Expression Analysis from Zygote to Blastocyst

Developmental cell, 2010-04, Vol.18 (4), p.675-685

2010

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Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow

Nature communications, 2018-03, Vol.9 (1), p.903-14, Article 903

2018

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Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis

Frontiers in cellular and infection microbiology, 2019, Vol.9, p.216-216

2019

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The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

Cell stem cell, 2010-02, Vol.6 (2), p.167-174

2010

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Transcriptomes of Dravet syndrome iPSC derived GABAergic cells reveal dysregulated pathways for chromatin remodeling and neurodevelopment

Neurobiology of disease, 2019-12, Vol.132, p.104583-104583, Article 104583

2019

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Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis

PLoS pathogens, 2015-01, Vol.11 (1), p.e1004600-e1004600

2015

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The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts

PLoS genetics, 2016-09, Vol.12 (9), p.e1006294-e1006294

2016

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Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

BMC genomics, 2016-06, Vol.17 (Suppl 2), p.471-471, Article 471

2016

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Simple cellular and network control principles govern complex patterns of motor behavior

Proceedings of the National Academy of Sciences - PNAS, 2009-11, Vol.106 (47), p.20027-20032

2009

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The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during the first developmental cell lineage segregation

Scientific reports, 2017-12, Vol.7 (1), p.17156-10, Article 17156

2017

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Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

Molecular systems biology, 2010-12, Vol.6 (1), p.456-n/a

2010

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The network organization of cancer-associated protein complexes in human tissues

Scientific reports, 2013-04, Vol.3 (1), p.1583-1583, Article 1583

2013

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Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model

Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (17), p.6853-6858

2013

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ZEB2 haploinsufficient Mowat-Wilson syndrome induced pluripotent stem cells show disrupted GABAergic transcriptional regulation and function

Frontiers in molecular neuroscience, 2022-10, Vol.15, p.988993-988993

2022

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Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism

PloS one, 2011-05, Vol.6 (5), p.e19759-e19759

2011

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Publisher Correction: Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow

Nature communications, 2018-05, Vol.9 (1), p.1852-1, Article 1852

2018

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Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas

The journal of clinical endocrinology and metabolism, 2012-12, Vol.97 (12), p.4631-4639

2012

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A primer on deep learning in genomics

Nature genetics, 2019-01, Vol.51 (1), p.12-18

2019

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Assessment of whole genome amplification for sequence capture and massively parallel sequencing

PloS one, 2014-01, Vol.9 (1), p.e84785

2014

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Polymorphisms in DCDC2 and S100B associate with developmental dyslexia

Journal of human genetics, 2015-07, Vol.60 (7), p.399-401

2015

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Understanding and Exploiting Information Spreading and Integrating Technologies

Journal of computer science and technology, 2011-09, Vol.26 (5), p.829-836

2011

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RNA-seq Data Analysis: A Practical Approach

1, 2014

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Role-similarity based functional prediction in networked systems: application to the yeast proteome

Journal of the Royal Society interface, 2005-09, Vol.2 (4), p.327-333

2005

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Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations

PloS one, 2011-11, Vol.6 (11), p.e26054

2011

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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

Resolution of Cell Fate Decisions Revealed by Single-Cell Gene Expression Analysis from Zygote to Blastocyst

Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow

Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis

The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

Transcriptomes of Dravet syndrome iPSC derived GABAergic cells reveal dysregulated pathways for chromatin remodeling and neurodevelopment

Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis

The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts

Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

Simple cellular and network control principles govern complex patterns of motor behavior

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during the first developmental cell lineage segregation

Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

The network organization of cancer-associated protein complexes in human tissues

Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model

ZEB2 haploinsufficient Mowat-Wilson syndrome induced pluripotent stem cells show disrupted GABAergic transcriptional regulation and function

Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism

Publisher Correction: Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow

Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas

A primer on deep learning in genomics

Assessment of whole genome amplification for sequence capture and massively parallel sequencing

Polymorphisms in DCDC2 and S100B associate with developmental dyslexia

Understanding and Exploiting Information Spreading and Integrating Technologies

RNA-seq Data Analysis: A Practical Approach

Role-similarity based functional prediction in networked systems: application to the yeast proteome

Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations

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