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High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells

Cell, 2014-06, Vol.157 (7), p.1724-1734

2014

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Releasing a preprint is associated with more attention and citations for the peer-reviewed article

eLife, 2019-12, Vol.8

2019

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Robust meta-analysis of gene expression using the elastic net

Nucleic acids research, 2015-07, Vol.43 (12), p.e79

2015

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Eating breakfast and avoiding late-evening snacking sustains lipid oxidation

PLoS biology, 2020-02, Vol.18 (2), p.e3000622-e3000622

2020

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LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes

PloS one, 2023-12, Vol.18 (12), p.e0292089

2023

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Machine learning identifies a compact gene set for monitoring the circadian clock in human blood

Genome medicine, 2017-02, Vol.9 (1), p.19-19, Article 19

Hughey, Jacob J

2017

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The risks of using the chi-square periodogram to estimate the period of biological rhythms

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008567-e1008567

2021

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Live-cell measurements of kinase activity in single cells using translocation reporters

Nature protocols, 2018-01, Vol.13 (1), p.155-169

2018

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Automated quality control and cell identification of droplet-based single-cell data using dropkick

Genome research, 2021-10, Vol.31 (10), p.1742

2021

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Evidence for widespread dysregulation of circadian clock progression in human cancer

PeerJ (San Francisco, CA), 2018-01, Vol.6, p.e4327-e4327, Article e4327

2018

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Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans

Journal of biological rhythms, 2016-12, Vol.31 (6), p.588-597

2016

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The seeker R package: simplified fetching and processing of transcriptome data

PeerJ (San Francisco, CA), 2022-11, Vol.10, p.e14372-e14372, Article e14372

2022

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Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

BMC genomics, 2019-11, Vol.20 (1), p.805-805, Article 805

2019

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pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

PeerJ (San Francisco, CA), 2021-03, Vol.9, p.e11071-e11071, Article e11071

2021

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The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants

Bioinformatics (Oxford, England), 2022-10, Vol.38 (21), p.4972-4974

2022

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Simphony: simulating large-scale, rhythmic data

PeerJ (San Francisco, CA), 2019-05, Vol.7, p.e6985-e6985, Article e6985

2019

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Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease

BMC gastroenterology, 2017-12, Vol.17 (1), p.156-156, Article 156

2017

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ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

Nucleic acids research, 2016-05, Vol.44 (8), p.e80

2016

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LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Journal of biological rhythms, 2019-02, Vol.34 (1), p.5-18

2019

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LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Journal of biological rhythms, 2019-02, Vol.34 (1), p.5-18

2019

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Single-cell NF- B dynamics reveal digital activation and analogue information processing

Nature (London), 2010-07, Vol.466 (7303), p.267-271

2010

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Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation

PloS one, 2013-01, Vol.8 (1), p.e53222-e53222

2013

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Single-cell NF-κB dynamics reveal digital activation and analogue information processing

Nature (London), 2010-07, Vol.466 (7303), p.267-271

2010

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Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records

Clinical chemistry (Baltimore, Md.), 2019-12, Vol.65 (12), p.1522-1531

2019

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Sex Inclusion in Transcriptome Studies of Daily Rhythms

Journal of biological rhythms, 2023-02, Vol.38 (1), p.3-14

2023

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High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells

Releasing a preprint is associated with more attention and citations for the peer-reviewed article

Robust meta-analysis of gene expression using the elastic net

Eating breakfast and avoiding late-evening snacking sustains lipid oxidation

LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes

Machine learning identifies a compact gene set for monitoring the circadian clock in human blood

The risks of using the chi-square periodogram to estimate the period of biological rhythms

Live-cell measurements of kinase activity in single cells using translocation reporters

Automated quality control and cell identification of droplet-based single-cell data using dropkick

Evidence for widespread dysregulation of circadian clock progression in human cancer

Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans

The seeker R package: simplified fetching and processing of transcriptome data

Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants

Simphony: simulating large-scale, rhythmic data

Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Single-cell NF- B dynamics reveal digital activation and analogue information processing

Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation

Single-cell NF-κB dynamics reveal digital activation and analogue information processing

Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records

Sex Inclusion in Transcriptome Studies of Daily Rhythms

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