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Integrative Analysis of Multi-omics Data for Discovery and Functional Studies of Complex Human Diseases

Advances in genetics, 2016, Vol.93, p.147-190

2016

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MERIT: Controlling Monte‐Carlo error rate in large‐scale Monte‐Carlo hypothesis testing

Statistics in medicine, 2024-01, Vol.43 (2), p.279-295

2024

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Oral microbiome of electronic cigarette users: A cross‐sectional exploration

Oral diseases, 2023-05, Vol.29 (4), p.1875-1884

2023

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Extension of PERMANOVA to Testing the Mediation Effect of the Microbiome

Genes, 2022-05, Vol.13 (6), p.940

2022

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A robust and transformation-free joint model with matching and regularization for metagenomic trajectory and disease onset

BMC genomics, 2022-09, Vol.23 (1), p.661-661, Article 661

2022

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Testing microbiome associations with survival times at both the community and individual taxon levels

PLoS computational biology, 2022-09, Vol.18 (9), p.e1010509-e1010509

2022

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Interaction between genetics and smoking in determining risk of coronary artery diseases

Genetic epidemiology, 2022-04, Vol.46 (3-4), p.199-212

2022

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Impact of Experimental Bias on Compositional Analysis of Microbiome Data

Genes, 2023-09, Vol.14 (9), p.1777

2023

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Obesity and patient‐reported sexual health outcomes in gynecologic cancer survivors: A systematic review

Research in nursing & health, 2022-12, Vol.45 (6), p.664-679

2022

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HIV, asymptomatic STI, and the rectal mucosal immune environment among young men who have sex with men

PLoS pathogens, 2023-05, Vol.19 (5), p.e1011219-e1011219

2023

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eQTL mapping using allele-specific count data is computationally feasible, powerful, and provides individual-specific estimates of genetic effects

PLoS genetics, 2022-03, Vol.18 (3), p.e1010076-e1010076

2022

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Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data

Microbiome, 2021-06, Vol.9 (1), p.133-133, Article 133

2021

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Use of high-resolution metabolomics to assess the biological perturbations associated with maternal exposure to Bisphenol A and Bisphenol F among pregnant African American women

Environment international, 2022-11, Vol.169, p.107530-107530, Article 107530

2022

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PhredEM: a phred‐score‐informed genotype‐calling approach for next‐generation sequencing studies

Genetic epidemiology, 2017-07, Vol.41 (5), p.375-387

2017

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Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women

Frontiers in cellular and infection microbiology, 2021-04, Vol.11, p.641005

2021

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Testing hypotheses about the microbiome using the linear decomposition model (LDM)

Bioinformatics, 2020-08, Vol.36 (14), p.4106-4115

2020

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A new approach to testing mediation of the microbiome at both the community and individual taxon levels

Bioinformatics, 2022-06, Vol.38 (12), p.3173-3180

2022

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Multi-Optimization of Ultrasonic-Assisted Enzymatic Extraction of Atratylodes macrocephala Polysaccharides and Antioxidants Using Response Surface Methodology and Desirability Function Approach

Molecules (Basel, Switzerland), 2015-12, Vol.20 (12), p.22220-22235

2015

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Exploring the Vaginal Microbiome and Intravaginal Practices in Postmenopausal Women

Nursing research (New York), 2021-09, Vol.70 (5), p.405-411

2021

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Comparison of vaginal microbiota in gynecologic cancer patients pre‐ and post‐radiation therapy and healthy women

Cancer medicine (Malden, MA), 2020-06, Vol.9 (11), p.3714-3724

2020

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Distribution of Functional CD4 and CD8 T cell Subsets in Blood and Rectal Mucosal Tissues

Scientific reports, 2019-05, Vol.9 (1), p.6951, Article 6951

2019

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LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control

Proceedings of the National Academy of Sciences - PNAS, 2022-07, Vol.119 (30), p.e2122788119-e2122788119

2022

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The rectal mucosal immune environment and HIV susceptibility among young men who have sex with men

Frontiers in immunology, 2022-10, Vol.13, p.972170-972170

2022

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Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls

PLoS genetics, 2016-05, Vol.12 (5), p.e1006040-e1006040

2016

Volltextzugriff (PDF)

Shiftwork, functional bowel symptoms, and the microbiome

PeerJ (San Francisco, CA), 2021-05, Vol.9, p.e11406-e11406, Article e11406

2021

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Integrative Analysis of Multi-omics Data for Discovery and Functional Studies of Complex Human Diseases

MERIT: Controlling Monte‐Carlo error rate in large‐scale Monte‐Carlo hypothesis testing

Oral microbiome of electronic cigarette users: A cross‐sectional exploration

Extension of PERMANOVA to Testing the Mediation Effect of the Microbiome

A robust and transformation-free joint model with matching and regularization for metagenomic trajectory and disease onset

Testing microbiome associations with survival times at both the community and individual taxon levels

Interaction between genetics and smoking in determining risk of coronary artery diseases

Impact of Experimental Bias on Compositional Analysis of Microbiome Data

Obesity and patient‐reported sexual health outcomes in gynecologic cancer survivors: A systematic review

HIV, asymptomatic STI, and the rectal mucosal immune environment among young men who have sex with men

eQTL mapping using allele-specific count data is computationally feasible, powerful, and provides individual-specific estimates of genetic effects

Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data

Use of high-resolution metabolomics to assess the biological perturbations associated with maternal exposure to Bisphenol A and Bisphenol F among pregnant African American women

PhredEM: a phred‐score‐informed genotype‐calling approach for next‐generation sequencing studies

Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women

Testing hypotheses about the microbiome using the linear decomposition model (LDM)

A new approach to testing mediation of the microbiome at both the community and individual taxon levels

Multi-Optimization of Ultrasonic-Assisted Enzymatic Extraction of Atratylodes macrocephala Polysaccharides and Antioxidants Using Response Surface Methodology and Desirability Function Approach

Exploring the Vaginal Microbiome and Intravaginal Practices in Postmenopausal Women

Comparison of vaginal microbiota in gynecologic cancer patients pre‐ and post‐radiation therapy and healthy women

Distribution of Functional CD4 and CD8 T cell Subsets in Blood and Rectal Mucosal Tissues

LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control

The rectal mucosal immune environment and HIV susceptibility among young men who have sex with men

Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls

Shiftwork, functional bowel symptoms, and the microbiome

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