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Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean

Proceedings of the National Academy of Sciences - PNAS, 2019-06, Vol.116 (24), p.11824-11832

2019

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A Primer for Microbiome Time-Series Analysis

Frontiers in genetics, 2020-04, Vol.11, p.310-310

2020

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Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

mBio, 2023-12, Vol.14 (6), p.e0167623

2023

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Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre

Nature communications, 2024-03, Vol.15 (1), p.2105-2105, Article 2105

2024

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Physiology governing diatom vs. dinoflagellate bloom and decline in coastal Santa Monica Bay

Frontiers in microbiology, 2023-11, Vol.14, p.1287326-1287326

2023

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Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes

Applied and Environmental Microbiology, 2014-07, Vol.80 (14), p.4363-4373

2014

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Are We Overestimating Protistan Diversity in Nature?

Trends in microbiology (Regular ed.), 2019-03, Vol.27 (3), p.197-205

2019

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Single-cell transcriptomics of small microbial eukaryotes: limitations and potential

The ISME Journal, 2017-05, Vol.11 (5), p.1282-1285

2017

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A Hard Day's Night: Diel Shifts in Microbial Eukaryotic Activity in the North Pacific Subtropical Gyre

Frontiers in Marine Science, 2018-10, Vol.5

2018

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Transcriptome of Thalassicolla nucleata Holobiont Reveals Details of a Radiolarian Symbiotic Relationship

Frontiers in Marine Science, 2019-06, Vol.6

2019

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Protistan community composition and metabolism in the North Pacific Subtropical Gyre: Influences of mesoscale eddies and depth

Environmental microbiology, 2024-01, Vol.26 (1), p.e16556-n/a

2024

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Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific

FEMS microbiology ecology, 2016-04, Vol.92 (4), p.fiw050-fiw050

2016

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Protistan grazing impacts microbial communities and carbon cycling at deep-sea hydrothermal vents

Proceedings of the National Academy of Sciences - PNAS, 2021-07, Vol.118 (29), p.1

2021

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Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities

Proceedings of the National Academy of Sciences - PNAS, 2021-02, Vol.118 (6)

2021

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Methodological ‘lenses’ influence the characterization of phytoplankton dynamics in a coastal upwelling ecosystem

Environmental microbiology reports, 2022-12, Vol.14 (6), p.897-906

2022

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Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight)

Environmental microbiology, 2022-12, Vol.24 (12), p.6033-6051

2022

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Shifting metabolic priorities among key protistan taxa within and below the euphotic zone

Environmental microbiology, 2018-08, Vol.20 (8), p.2865-2879

2018

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Globally‐distributed microbial eukaryotes exhibit endemism at deep‐sea hydrothermal vents

Molecular ecology, 2023-12, Vol.32 (23), p.6580-6598

2023

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Microbial eukaryotic predation pressure and biomass at deep-sea hydrothermal vents

The ISME Journal, 2024-01, Vol.18 (1)

2024

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SSU‐rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent

The Journal of eukaryotic microbiology, 2019-07, Vol.66 (4), p.637-653

2019

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Marine Microeukaryote Metatranscriptomics: Sample Processing and Bioinformatic Workflow Recommendations for Ecological Applications

Frontiers in Marine Science, 2022-06, Vol.9

2022

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Estimating Protistan Diversity Using High‐Throughput Sequencing

The Journal of eukaryotic microbiology, 2015-09, Vol.62 (5), p.688-693

2015

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The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment

Frontiers in education (Lausanne), 2021-10, Vol.6

2021

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Come rain or shine: Depth not season shapes the active protistan community at station ALOHA in the North Pacific Subtropical Gyre

Deep-sea research. Part I, Oceanographic research papers, 2021-04, Vol.170, p.103494, Article 103494

2021

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Ethnicity-Influenced Microbiota: A Future Healthcare Perspective

Trends in microbiology (Regular ed.), 2019-03, Vol.27 (3), p.197

2019

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Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean

A Primer for Microbiome Time-Series Analysis

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre

Physiology governing diatom vs. dinoflagellate bloom and decline in coastal Santa Monica Bay

Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes

Are We Overestimating Protistan Diversity in Nature?

Single-cell transcriptomics of small microbial eukaryotes: limitations and potential

A Hard Day's Night: Diel Shifts in Microbial Eukaryotic Activity in the North Pacific Subtropical Gyre

Transcriptome of Thalassicolla nucleata Holobiont Reveals Details of a Radiolarian Symbiotic Relationship

Protistan community composition and metabolism in the North Pacific Subtropical Gyre: Influences of mesoscale eddies and depth

Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific

Protistan grazing impacts microbial communities and carbon cycling at deep-sea hydrothermal vents

Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities

Methodological ‘lenses’ influence the characterization of phytoplankton dynamics in a coastal upwelling ecosystem

Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight)

Shifting metabolic priorities among key protistan taxa within and below the euphotic zone

Globally‐distributed microbial eukaryotes exhibit endemism at deep‐sea hydrothermal vents

Microbial eukaryotic predation pressure and biomass at deep-sea hydrothermal vents

SSU‐rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent

Marine Microeukaryote Metatranscriptomics: Sample Processing and Bioinformatic Workflow Recommendations for Ecological Applications

Estimating Protistan Diversity Using High‐Throughput Sequencing

The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment

Come rain or shine: Depth not season shapes the active protistan community at station ALOHA in the North Pacific Subtropical Gyre

Ethnicity-Influenced Microbiota: A Future Healthcare Perspective

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