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DTF: Deep Tensor Factorization for predicting anticancer drug synergy

Bioinformatics, 2020-08, Vol.36 (16), p.4483-4489

2020

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Tumor-Infiltrating CD8 T Cells Predict Clinical Breast Cancer Outcomes in Young Women

Cancers, 2020-04, Vol.12 (5), p.1076

2020

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A Two-Dimensional Sparse Matrix Profile DenseNet for COVID-19 Diagnosis Using Chest CT Images

IEEE access, 2020, Vol.8, p.213718-213728

2020

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SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

Nucleic acids research, 2011-10, Vol.39 (19), p.e132

2011

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Computational Drug Repurposing for Alzheimer’s Disease Using Risk Genes From GWAS and Single-Cell RNA Sequencing Studies

Frontiers in pharmacology, 2021-06, Vol.12

2021

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Identification of significantly mutated subnetworks in the breast cancer genome

Scientific reports, 2021-01, Vol.11 (1), p.642-642, Article 642

2021

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Association Analysis of Deep Genomic Features Extracted by Denoising Autoencoders in Breast Cancer

Cancers, 2019-04, Vol.11 (4), p.494

2019

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Deep clustering of small molecules at large-scale via variational autoencoder embedding and K-means

BMC bioinformatics, 2022-04, Vol.23 (Suppl 4), p.132-132, Article 132

2022

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Epigenetics of Sepsis

Critical care medicine, 2020-05, Vol.48 (5), p.745

2020

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A novel integrative computational framework for breast cancer radiogenomic biomarker discovery

Computational and structural biotechnology journal, 2022-01, Vol.20, p.2484-2494

2022

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Association Analysis of Somatic Copy Number Alteration Burden With Breast Cancer Survival

Frontiers in genetics, 2018-10, Vol.9, p.421-421

2018

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Predicting breast cancer drug response using a multiple-layer cell line drug response network model

BMC cancer, 2021-05, Vol.21 (1), p.1-648, Article 648

2021

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Self-supervised deep learning model for COVID-19 lung CT image segmentation highlighting putative causal relationship among age, underlying disease and COVID-19

Journal of translational medicine, 2021-07, Vol.19 (1), p.1-318, Article 318

2021

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Radiogenomic association of deep MR imaging features with genomic profiles and clinical characteristics in breast cancer

Biomarker research, 2023-01, Vol.11 (1), p.9-9, Article 9

2023

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Computational drug repurposing for inflammatory bowel disease using genetic information

Computational and structural biotechnology journal, 2019-01, Vol.17, p.127-135

2019

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MicroRNA-144 is a circulating effector of remote ischemic preconditioning

Basic research in cardiology, 2014-09, Vol.109 (5), p.423-423, Article 423

2014

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Conditional generative adversarial network driven radiomic prediction of mutation status based on magnetic resonance imaging of breast cancer

Journal of translational medicine, 2024-03, Vol.22 (1), p.226-226

2024

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A machine learning model trained on a high-throughput antibacterial screen increases the hit rate of drug discovery

PLoS computational biology, 2022-10, Vol.18 (10), p.e1010613-e1010613

2022

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Computational Prediction of the Pathogenic Status of Cancer-Specific Somatic Variants

Frontiers in genetics, 2022-01, Vol.12, p.805656-805656

2022

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Prenatal exposure to maternal cigarette smoking and DNA methylation: epigenome-wide association in a discovery sample of adolescents and replication in an independent cohort at birth through 17 years of age

Environmental health perspectives, 2015-02, Vol.123 (2), p.193-199

2015

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Integrative Data Augmentation with U-Net Segmentation Masks Improves Detection of Lymph Node Metastases in Breast Cancer Patients

Cancers, 2020-10, Vol.12 (10), p.2934

2020

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An OpenMP-based tool for finding longest common subsequence in bioinformatics

BMC research notes, 2019-04, Vol.12 (1), p.220-220, Article 220

2019

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ABT-MPNN: an atom-bond transformer-based message-passing neural network for molecular property prediction

Journal of cheminformatics, 2023-02, Vol.15 (1), p.29-29, Article 29

2023

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Identification of genomic signatures in circulating tumor cells from breast cancer

International journal of cancer, 2015-07, Vol.137 (2), p.332-344

2015

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Polygenic risk and causal inference of psychiatric comorbidity in inflammatory bowel disease among patients with European ancestry

Journal of translational medicine, 2022-01, Vol.20 (1), p.43-43, Article 43

2022

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DTF: Deep Tensor Factorization for predicting anticancer drug synergy

Tumor-Infiltrating CD8 T Cells Predict Clinical Breast Cancer Outcomes in Young Women

A Two-Dimensional Sparse Matrix Profile DenseNet for COVID-19 Diagnosis Using Chest CT Images

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

Computational Drug Repurposing for Alzheimer’s Disease Using Risk Genes From GWAS and Single-Cell RNA Sequencing Studies

Identification of significantly mutated subnetworks in the breast cancer genome

Association Analysis of Deep Genomic Features Extracted by Denoising Autoencoders in Breast Cancer

Deep clustering of small molecules at large-scale via variational autoencoder embedding and K-means

Epigenetics of Sepsis

A novel integrative computational framework for breast cancer radiogenomic biomarker discovery

Association Analysis of Somatic Copy Number Alteration Burden With Breast Cancer Survival

Predicting breast cancer drug response using a multiple-layer cell line drug response network model

Self-supervised deep learning model for COVID-19 lung CT image segmentation highlighting putative causal relationship among age, underlying disease and COVID-19

Radiogenomic association of deep MR imaging features with genomic profiles and clinical characteristics in breast cancer

Computational drug repurposing for inflammatory bowel disease using genetic information

MicroRNA-144 is a circulating effector of remote ischemic preconditioning

Conditional generative adversarial network driven radiomic prediction of mutation status based on magnetic resonance imaging of breast cancer

A machine learning model trained on a high-throughput antibacterial screen increases the hit rate of drug discovery

Computational Prediction of the Pathogenic Status of Cancer-Specific Somatic Variants

Prenatal exposure to maternal cigarette smoking and DNA methylation: epigenome-wide association in a discovery sample of adolescents and replication in an independent cohort at birth through 17 years of age

Integrative Data Augmentation with U-Net Segmentation Masks Improves Detection of Lymph Node Metastases in Breast Cancer Patients

An OpenMP-based tool for finding longest common subsequence in bioinformatics

ABT-MPNN: an atom-bond transformer-based message-passing neural network for molecular property prediction

Identification of genomic signatures in circulating tumor cells from breast cancer

Polygenic risk and causal inference of psychiatric comorbidity in inflammatory bowel disease among patients with European ancestry

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