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miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

Nucleic acids research, 2016-01, Vol.44 (D1), p.D239

2016

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GSAlign: an efficient sequence alignment tool for intra-species genomes

BMC genomics, 2020-02, Vol.21 (1), p.182-182, Article 182

2020

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Hierarchical and programmable one-pot synthesis of oligosaccharides

Nature communications, 2018-12, Vol.9 (1), p.5202-9, Article 5202

2018

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Co-AMPpred for in silico-aided predictions of antimicrobial peptides by integrating composition-based features

BMC bioinformatics, 2021-07, Vol.22 (1), p.1-389, Article 389

2021

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N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding

Scientific reports, 2019-11, Vol.9 (1), p.15975-11, Article 15975

2019

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A flexible template generation and matching method with applications for publication reference metadata extraction

Journal of the American Society for Information Science and Technology, 2021-01, Vol.72 (1), p.32-45

2021

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Biomedical named entity recognition and linking datasets: survey and our recent development

Briefings in bioinformatics, 2020-12, Vol.21 (6), p.2219-2238

2020

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Surveying biomedical relation extraction: a critical examination of current datasets and the proposal of a new resource

Briefings in bioinformatics, 2024-03, Vol.25 (3)

2024

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Metabolite Identification for Mass Spectrometry-Based Metabolomics Using Multiple Types of Correlated Ion Information

Analytical chemistry (Washington), 2015-02, Vol.87 (4), p.2143-2151

2015

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Predicting RNA-binding sites of proteins using support vector machines and evolutionary information

BMC bioinformatics, 2008-12, Vol.9 Suppl 12 (Suppl 12), p.S6-S6, Article S6

2008

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ILeukin10Pred: A Computational Approach for Predicting IL-10-Inducing Immunosuppressive Peptides Using Combinations of Amino Acid Global Features

Biology (Basel, Switzerland), 2021-12, Vol.11 (1), p.5

2021

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IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an Efficient Peptide Alignment Approach and Spectral Data Validation

Molecular & cellular proteomics, 2010-01, Vol.9 (1), p.131-144

2010

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SPIRIT: A Tree Kernel-Based Method for Topic Person Interaction Detection

IEEE transactions on knowledge and data engineering, 2016-09, Vol.28 (9), p.2494-2507

2016

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Combining Relevance Language Modeling and Clarity Measure for Extractive Speech Summarization

IEEE/ACM transactions on audio, speech, and language processing, 2015-06, Vol.23 (6), p.957-969

2015

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NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition

BMC bioinformatics, 2006-12, Vol.7 Suppl 5 (S5), p.S11-S11, Article S11

2006

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MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification

Nucleic acids research, 2016-07, Vol.44 (W1), p.W575

2016

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Rationalization and design of the complementarity determining region sequences in an antibody-antigen recognition interface

PloS one, 2012-03, Vol.7 (3), p.e33340-e33340

2012

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Entailment-Based Intelligent System for Software Project Monitoring and Control

IEEE systems journal, 2018-03, Vol.12 (1), p.216-227

2018

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LBERT: Lexically aware Transformer-based Bidirectional Encoder Representation model for learning universal bio-entity relations

Bioinformatics (Oxford, England), 2021-04, Vol.37 (3), p.404-412

2021

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CloudDOE: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce

PloS one, 2014-06, Vol.9 (6), p.e98146-e98146

2014

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MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature

BMC bioinformatics, 2011-12, Vol.12 (1), p.471-471, Article 471

2011

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Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms

PloS one, 2012-07, Vol.7 (7), p.e40846

2012

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Programmable One-Pot Synthesis of Oligosaccharides

Biochemistry (Easton), 2020-09, Vol.59 (34), p.3078-3088

2020

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Statistical principle-based approach for gene and protein related object recognition

Journal of cheminformatics, 2018-12, Vol.10 (1), p.64-9, Article 64

2018

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Predicting helix–helix interactions from residue contacts in membrane proteins

Bioinformatics, 2009-04, Vol.25 (8), p.996-1003

2009

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miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

GSAlign: an efficient sequence alignment tool for intra-species genomes

Hierarchical and programmable one-pot synthesis of oligosaccharides

Co-AMPpred for in silico-aided predictions of antimicrobial peptides by integrating composition-based features

N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding

A flexible template generation and matching method with applications for publication reference metadata extraction

Biomedical named entity recognition and linking datasets: survey and our recent development

Surveying biomedical relation extraction: a critical examination of current datasets and the proposal of a new resource

Metabolite Identification for Mass Spectrometry-Based Metabolomics Using Multiple Types of Correlated Ion Information

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information

ILeukin10Pred: A Computational Approach for Predicting IL-10-Inducing Immunosuppressive Peptides Using Combinations of Amino Acid Global Features

IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an Efficient Peptide Alignment Approach and Spectral Data Validation

SPIRIT: A Tree Kernel-Based Method for Topic Person Interaction Detection

Combining Relevance Language Modeling and Clarity Measure for Extractive Speech Summarization

NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition

MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification

Rationalization and design of the complementarity determining region sequences in an antibody-antigen recognition interface

Entailment-Based Intelligent System for Software Project Monitoring and Control

LBERT: Lexically aware Transformer-based Bidirectional Encoder Representation model for learning universal bio-entity relations

CloudDOE: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce

MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature

Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms

Programmable One-Pot Synthesis of Oligosaccharides

Statistical principle-based approach for gene and protein related object recognition

Predicting helix–helix interactions from residue contacts in membrane proteins

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