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Clinical and biological insights from viral genome sequencing

Nature reviews. Microbiology, 2017-03, Vol.15 (3), p.183-192

2017

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Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

The Lancet infectious diseases, 2020-11, Vol.20 (11), p.1263-1271

2020

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Host genetics of Epstein-Barr virus infection, latency and disease

Reviews in medical virology, 2015-03, Vol.25 (2), p.71-84

2015

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Severe Epstein–Barr virus infection in primary immunodeficiency and the normal host

British journal of haematology, 2016-11, Vol.175 (4), p.559-576

2016

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How infectious diseases arrived in the colonial Americas

eLife, 2021-09, Vol.10

2021

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Human Herpesvirus Sequencing in the Genomic Era: The Growing Ranks of the Herpetic Legion

Pathogens (Basel), 2019-10, Vol.8 (4), p.186

Houldcroft, Charlotte J

2019

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Epstein–Barr virus (EBV) deletions as biomarkers of response to treatment of chronic active EBV

British journal of haematology, 2021-10, Vol.195 (2), p.249-255

2021

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HCMV carriage in the elderly diminishes anti-viral functionality of the adaptive immune response resulting in virus replication at peripheral sites

Frontiers in immunology, 2022-12, Vol.13, p.1083230

2022

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Disease-associated XMRV sequences are consistent with laboratory contamination

Retrovirology, 2010-12, Vol.7 (1), p.111-111, Article 111

2010

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Latent Cytomegalovirus-Driven Recruitment of Activated CD4+ T Cells Promotes Virus Reactivation

Frontiers in immunology, 2021-04, Vol.12, p.657945-657945

2021

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Human biology and ancient DNA: exploring disease, domestication and movement

Annals of human biology, 2019-02, Vol.46 (2), p.95-98

2019

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Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit

Frontiers in microbiology, 2021-07, Vol.12, p.667790-667790

2021

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The relative roles of maternal survival and inter-personal violence as selection pressures on the persistence of Neanderthal hypercoagulability alleles in modern Europeans

Annals of human biology, 2019-02, Vol.46 (2), p.99-108

2019

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Migrating microbes: what pathogens can tell us about population movements and human evolution

Annals of human biology, 2017-07, Vol.44 (5), p.397-407

2017

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Host genetic variants and gene expression patterns associated with Epstein-Barr virus copy number in lymphoblastoid cell lines

PloS one, 2014-10, Vol.9 (10), p.e108384-e108384

2014

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The Role of aDNA in Understanding the Coevolutionary Patterns of Human Sexually Transmitted Infections

Genes, 2018-06, Vol.9 (7), p.317

2018

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Assessing Anti-HCMV Cell Mediated Immune Responses in Transplant Recipients and Healthy Controls Using a Novel Functional Assay

Frontiers in cellular and infection microbiology, 2020-06, Vol.10, p.275-275

2020

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COVID-19, the first pandemic in the post-genomic era

Current opinion in virology, 2021-10, Vol.50, p.40-48

2021

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Neanderthal genomics suggests a pleistocene time frame for the first epidemiologic transition

American journal of physical anthropology, 2016-07, Vol.160 (3), p.379-388

2016

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An Adagio for Viruses, Played Out on Ancient DNA

Genome biology and evolution, 2023-03, Vol.15 (3)

2023

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Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination

Proceedings of the National Academy of Sciences - PNAS, 2019-03, Vol.116 (12), p.5693-5698

2019

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Infectious disease in the Pleistocene: Old friends or old foes?

American journal of biological anthropology, 2023-12, Vol.182 (4), p.513-531

2023

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REPLY TO JENSEN AND KOWALIK: Consideration of mixed infections is central to understanding HCMV intrahost diversity

Proceedings of the National Academy of Sciences - PNAS, 2020-01, Vol.117 (2), p.818-819

2020

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Detection of human adenovirus F41 in wastewater and its relationship to clinical cases of acute hepatitis of unknown aetiology

The Science of the total environment, 2023-01, Vol.857, p.159579, Article 159579

2023

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Clinical and biological insights from viral genome sequencing

Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

Host genetics of Epstein-Barr virus infection, latency and disease

Severe Epstein–Barr virus infection in primary immunodeficiency and the normal host

How infectious diseases arrived in the colonial Americas

Human Herpesvirus Sequencing in the Genomic Era: The Growing Ranks of the Herpetic Legion

Epstein–Barr virus (EBV) deletions as biomarkers of response to treatment of chronic active EBV

HCMV carriage in the elderly diminishes anti-viral functionality of the adaptive immune response resulting in virus replication at peripheral sites

Disease-associated XMRV sequences are consistent with laboratory contamination

Latent Cytomegalovirus-Driven Recruitment of Activated CD4+ T Cells Promotes Virus Reactivation

Human biology and ancient DNA: exploring disease, domestication and movement

Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit

The relative roles of maternal survival and inter-personal violence as selection pressures on the persistence of Neanderthal hypercoagulability alleles in modern Europeans

Migrating microbes: what pathogens can tell us about population movements and human evolution

Host genetic variants and gene expression patterns associated with Epstein-Barr virus copy number in lymphoblastoid cell lines

The Role of aDNA in Understanding the Coevolutionary Patterns of Human Sexually Transmitted Infections

Assessing Anti-HCMV Cell Mediated Immune Responses in Transplant Recipients and Healthy Controls Using a Novel Functional Assay

COVID-19, the first pandemic in the post-genomic era

Neanderthal genomics suggests a pleistocene time frame for the first epidemiologic transition

An Adagio for Viruses, Played Out on Ancient DNA

Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination

Infectious disease in the Pleistocene: Old friends or old foes?

REPLY TO JENSEN AND KOWALIK: Consideration of mixed infections is central to understanding HCMV intrahost diversity

Patterns of within-host genetic diversity in SARS-CoV-2

Detection of human adenovirus F41 in wastewater and its relationship to clinical cases of acute hepatitis of unknown aetiology

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