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Elucidation of sigma factor-associated networks in Pseudomonas aeruginosa reveals a modular architecture with limited and function-specific crosstalk

PLoS pathogens, 2015-03, Vol.11 (3), p.e1004744-e1004744

2015

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The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation

mBio, 2015-06, Vol.6 (4), p.e00749-e00749

2015

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Whole patient knowledge modeling of COVID-19 symptomatology reveals common molecular mechanisms

Frontiers in Molecular Medicine, 2023-01, Vol.2, p.1035290

2023

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The COVID-19 explorer-An integrated, whole patient knowledge model of COVID-19 disease

Frontiers in Molecular Medicine, 2022-12, Vol.2, p.1035215

2022

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BACTOME-a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates

Nucleic acids research, 2019-01, Vol.47 (D1), p.D716-D720

2019

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Diagnostics and Resistance Profiling of Bacterial Pathogens

Current topics in microbiology and immunology, 2016, Vol.398, p.89-102

2016

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MicroRNA expression profile in human macrophages in response to Leishmania major infection

PLoS neglected tropical diseases, 2013-10, Vol.7 (10), p.e2478-e2478

2013

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Transcriptomic signature of Leishmania infected mice macrophages: a metabolic point of view

PLoS neglected tropical diseases, 2012-08, Vol.6 (8), p.e1763-e1763

2012

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Elucidation of Sigma Factor-Associated Networks in Pseudomonas aeruginosa Reveals a Modular Architecture with Limited and Function-Specific Crosstalk: e1004744

PLoS pathogens, 2015-03, Vol.11 (3)

2015

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Comparative analysis of resistant and susceptible macrophage gene expression response to Leishmania major parasite

BMC genomics, 2013-10, Vol.14 (1), p.723-723

2013

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Activation of TLX3 and NKX2-5 in t(5;14)(q35;q32) T-cell acute lymphoblastic leukemia by remote 3'-BCL11B enhancers and coregulation by Pu.1 and HMGA1

Cancer research (Chicago, Ill.), 2007-02, Vol.67 (4), p.1461-1471

2007

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Identification of key mechanisms controlling gene expression in Leishmania infected macrophages using genome-wide promoter analysis

Infection, genetics and evolution, 2011-06, Vol.11 (4), p.769-777

2011

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TiProD: the Tissue-specific Promoter Database

Nucleic acids research, 2006-01, Vol.34 (Database issue), p.D104-D107

2006

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Functional Characterization of the BCL11B Breakpoint Region Reveals Multiple Enhancers at Dnase-I Hypersensitive Sites Some of Which Control NK-Family Homeobox Genes in T-ALL Cells with t(5;14)(q35;q32)

Blood, 2005-11, Vol.106 (11), p.845-845

2005

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Inhibition of TLX3 and NKX2-5 in t(5;14)(q35;q32) T-ALL after Blocking Remote 3′-BCL11B Enhancer Sequences with Matching DNA Oligos Reveals Coregulation by PU.1 and HMGA1

Blood, 2006-11, Vol.108 (11), p.2212-2212

2006

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Composition-sensitive analysis of the human genome for regulatory signals

In silico biology, 2003, Vol.3 (1-2), p.145

2003

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Grafting of discontinuous sites: a protein modeling strategy

Protein engineering, 1996-11, Vol.9 (11), p.931-939

1996

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Elucidation of sigma factor-associated networks in Pseudomonas aeruginosa reveals a modular architecture with limited and function-specific crosstalk

The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation

Whole patient knowledge modeling of COVID-19 symptomatology reveals common molecular mechanisms

The COVID-19 explorer-An integrated, whole patient knowledge model of COVID-19 disease

BACTOME-a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates

Diagnostics and Resistance Profiling of Bacterial Pathogens

MicroRNA expression profile in human macrophages in response to Leishmania major infection

Transcriptomic signature of Leishmania infected mice macrophages: a metabolic point of view

Elucidation of Sigma Factor-Associated Networks in Pseudomonas aeruginosa Reveals a Modular Architecture with Limited and Function-Specific Crosstalk: e1004744

Comparative analysis of resistant and susceptible macrophage gene expression response to Leishmania major parasite

Activation of TLX3 and NKX2-5 in t(5;14)(q35;q32) T-cell acute lymphoblastic leukemia by remote 3'-BCL11B enhancers and coregulation by Pu.1 and HMGA1

Identification of key mechanisms controlling gene expression in Leishmania infected macrophages using genome-wide promoter analysis

TiProD: the Tissue-specific Promoter Database

Functional Characterization of the BCL11B Breakpoint Region Reveals Multiple Enhancers at Dnase-I Hypersensitive Sites Some of Which Control NK-Family Homeobox Genes in T-ALL Cells with t(5;14)(q35;q32)

Inhibition of TLX3 and NKX2-5 in t(5;14)(q35;q32) T-ALL after Blocking Remote 3′-BCL11B Enhancer Sequences with Matching DNA Oligos Reveals Coregulation by PU.1 and HMGA1

Composition-sensitive analysis of the human genome for regulatory signals

Grafting of discontinuous sites: a protein modeling strategy

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