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GPrank: an R package for detecting dynamic elements from genome-wide time series

BMC bioinformatics, 2018-10, Vol.19 (1), p.367-367, Article 367

2018

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Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

PloS one, 2015-05, Vol.10 (5), p.e0126545-e0126545

2015

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Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

Nature communications, 2016-09, Vol.7 (1), p.12797-12797, Article 12797

2016

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Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

Proceedings of the National Academy of Sciences - PNAS, 2015-10, Vol.112 (42), p.13115-13120

2015

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Efficient differentially private learning improves drug sensitivity prediction

Biology direct, 2018-02, Vol.13 (1), p.1-1, Article 1

2018

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Gaussian process test for high-throughput sequencing time series: application to experimental evolution

Bioinformatics, 2015-06, Vol.31 (11), p.1762-1770

2015

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Strong pathogen competition in neonatal gut colonisation

Nature communications, 2022-12, Vol.13 (1), p.7417-7417, Article 7417

2022

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Privacy-preserving data sharing via probabilistic modeling

Patterns (New York, N.Y.), 2021-07, Vol.2 (7), p.100271-100271, Article 100271

2021

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Model-based method for transcription factor target identification with limited data

Proceedings of the National Academy of Sciences - PNAS, 2010-04, Vol.107 (17), p.7793-7798

2010

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Digital public health leadership in the global fight for health security

BMJ global health, 2023-02, Vol.8 (2), p.e011454

2023

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Identifying differentially expressed transcripts from RNA-seq data with biological variation

Bioinformatics (Oxford, England), 2012-07, Vol.28 (13), p.1721-1728

2012

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Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data

PLoS computational biology, 2014-05, Vol.10 (5), p.e1003598-e1003598

2014

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Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

PeerJ (San Francisco, CA), 2017-09, Vol.5, p.e3742-e3742, Article e3742

2017

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Analysis of differential splicing suggests different modes of short-term splicing regulation

Bioinformatics, 2016-06, Vol.32 (12), p.i147-i155

2016

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Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison

BMC systems biology, 2012-05, Vol.6 (1), p.53-53

2012

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High-resolution sweep metagenomics using fast probabilistic inference

Wellcome open research, 2020-01, Vol.5, p.14-14

2020

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Fast and accurate approximate inference of transcript expression from RNA-seq data

Bioinformatics (Oxford, England), 2015-12, Vol.31 (24), p.3881-3889

2015

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On the inconsistency of ℓ 1 -penalised sparse precision matrix estimation

BMC bioinformatics, 2016-12, Vol.17 (Suppl 16), p.448-448, Article 448

2016

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Exploration and retrieval of whole-metagenome sequencing samples

Bioinformatics (Oxford, England), 2014-09, Vol.30 (17), p.2471-2479

2014

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Representation transfer for differentially private drug sensitivity prediction

Bioinformatics, 2019-07, Vol.35 (14), p.i218-i224

2019

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Seasonal Variation in Genome-Wide DNA Methylation Patterns and the Onset of Seasonal Timing of Reproduction in Great Tits

Genome biology and evolution, 2019-03, Vol.11 (3), p.970-983

2019

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A longitudinal genomic and functional analysis of Clostridium botulinum isolated from an infant botulism case

Toxicon (Oxford), 2021-01, Vol.190, p.S17-S17

2021

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d3p - A Python Package for Differentially-Private Probabilistic Programming

Proceedings on Privacy Enhancing Technologies, 2022-04, Vol.2022 (2), p.407-425

2022

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Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities

Bioinformatics, 2008-08, Vol.24 (16), p.i70-i75

2008

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Strong pathogen competition in neonatal gut colonisation

Nature communications, 2022

2022

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GPrank: an R package for detecting dynamic elements from genome-wide time series

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

Efficient differentially private learning improves drug sensitivity prediction

Gaussian process test for high-throughput sequencing time series: application to experimental evolution

Strong pathogen competition in neonatal gut colonisation

Privacy-preserving data sharing via probabilistic modeling

Model-based method for transcription factor target identification with limited data

Digital public health leadership in the global fight for health security

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

Analysis of differential splicing suggests different modes of short-term splicing regulation

Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison

High-resolution sweep metagenomics using fast probabilistic inference

Fast and accurate approximate inference of transcript expression from RNA-seq data

On the inconsistency of ℓ 1 -penalised sparse precision matrix estimation

Exploration and retrieval of whole-metagenome sequencing samples

Representation transfer for differentially private drug sensitivity prediction

Seasonal Variation in Genome-Wide DNA Methylation Patterns and the Onset of Seasonal Timing of Reproduction in Great Tits

A longitudinal genomic and functional analysis of Clostridium botulinum isolated from an infant botulism case

d3p - A Python Package for Differentially-Private Probabilistic Programming

Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities

Strong pathogen competition in neonatal gut colonisation

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