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Polypolish: Short-read polishing of long-read bacterial genome assemblies

PLoS computational biology, 2022-01, Vol.18 (1), p.e1009802-e1009802

2022

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The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development

Cell host & microbe, 2015-05, Vol.17 (5), p.704-715

2015

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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005595-e1005595

2017

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The Central Dogma Decentralized: New Perspectives on RNA Function and Local Translation in Neurons

Neuron (Cambridge, Mass.), 2013-10, Vol.80 (3), p.648-657

2013

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Performance of neural network basecalling tools for Oxford Nanopore sequencing

Genome Biology, 2019-06, Vol.20 (1), p.129-129, Article 129

2019

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Local translation in neurons: visualization and function

Nature structural & molecular biology, 2019-07, Vol.26 (7), p.557-566

2019

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Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing

PLoS computational biology, 2023-03, Vol.19 (3), p.e1010905

2023

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Population genomics of Klebsiella pneumoniae

Nature reviews. Microbiology, 2020-06, Vol.18 (6), p.344-359

2020

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Dynamic Axonal Translation in Developing and Mature Visual Circuits

Cell, 2016-06, Vol.166 (1), p.181-192

2016

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Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

PLoS genetics, 2019-04, Vol.15 (4), p.e1008114-e1008114

2019

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Bandage: interactive visualization of de novo genome assemblies

Bioinformatics, 2015-10, Vol.31 (20), p.3350-3352

2015

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Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease

Cell host & microbe, 2018-09, Vol.24 (3), p.341-352.e5

2018

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A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

Nature communications, 2021-07, Vol.12 (1), p.4188-4188, Article 4188

2021

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Remote Control of Gene Function by Local Translation

Cell, 2014-03, Vol.157 (1), p.26-40

2014

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Vitamin D over the first decade and susceptibility to childhood allergy and asthma

Journal of allergy and clinical immunology, 2017-02, Vol.139 (2), p.472-481.e9

2017

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FastSpar: rapid and scalable correlation estimation for compositional data

Bioinformatics, 2019-03, Vol.35 (6), p.1064-1066

2019

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Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

Journal of clinical microbiology, 2018-06, Vol.56 (6)

2018

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Trycycler: consensus long-read assemblies for bacterial genomes

Genome Biology, 2021-09, Vol.22 (1), p.266-266, Article 266

2021

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Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

PLoS computational biology, 2018-11, Vol.14 (11), p.e1006583

2018

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Geodynamic evolution of southwestern North America since the Late Eocene

Nature communications, 2019-11, Vol.10 (1), p.5213-18, Article 5213

2019

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Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 1; peer review: 4 approved]

F1000 research, 2019, Vol.8, p.2138

2019

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Molecular control of local translation in axon development and maintenance

Current opinion in neurobiology, 2018-08, Vol.51, p.86-94

2018

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Axonal mRNA localization and local protein synthesis in nervous system assembly, maintenance and repair

Nature reviews. Neuroscience, 2012-04, Vol.13 (5), p.308-324

2012

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Local Translation of Extranuclear Lamin B Promotes Axon Maintenance

Cell, 2012-02, Vol.148 (4), p.752-764

2012

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Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China

Emerging infectious diseases, 2020-02, Vol.26 (2), p.289-297

2020

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Polypolish: Short-read polishing of long-read bacterial genome assemblies

The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

The Central Dogma Decentralized: New Perspectives on RNA Function and Local Translation in Neurons

Performance of neural network basecalling tools for Oxford Nanopore sequencing

Local translation in neurons: visualization and function

Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing

Population genomics of Klebsiella pneumoniae

Dynamic Axonal Translation in Developing and Mature Visual Circuits

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

Bandage: interactive visualization of de novo genome assemblies

Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

Remote Control of Gene Function by Local Translation

Vitamin D over the first decade and susceptibility to childhood allergy and asthma

FastSpar: rapid and scalable correlation estimation for compositional data

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

Trycycler: consensus long-read assemblies for bacterial genomes

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

Geodynamic evolution of southwestern North America since the Late Eocene

Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 1; peer review: 4 approved]

Molecular control of local translation in axon development and maintenance

Axonal mRNA localization and local protein synthesis in nervous system assembly, maintenance and repair

Local Translation of Extranuclear Lamin B Promotes Axon Maintenance

Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China

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