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Prediction of locally stable RNA secondary structures for genome-wide surveys

Bioinformatics, 2004-01, Vol.20 (2), p.186-190

2004

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Vienna RNA secondary structure server

Nucleic acids research, 2003-07, Vol.31 (13), p.3429-3431

Hofacker, Ivo L

2003

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Fast and Reliable Prediction of Noncoding RNAs

Proceedings of the National Academy of Sciences - PNAS, 2005-02, Vol.102 (7), p.2454-2459

2005

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Secondary Structure Prediction for Aligned RNA Sequences

Journal of molecular biology, 2002-06, Vol.319 (5), p.1059-1066

2002

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Memory efficient folding algorithms for circular RNA secondary structures

Bioinformatics, 2006-05, Vol.22 (10), p.1172-1176

2006

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Thermodynamics of RNA–RNA binding

Bioinformatics, 2006-05, Vol.22 (10), p.1177-1182

2006

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Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

Nature biotechnology, 2005-11, Vol.23 (11), p.1383-1390

2005

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Local RNA base pairing probabilities in large sequences

Bioinformatics, 2006-03, Vol.22 (5), p.614-615

2006

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The expansion of the metazoan microRNA repertoire

BMC genomics, 2006-02, Vol.7 (1), p.25-25, Article 25

2006

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Consensus Folding of Aligned Sequences as a New Measure for the Detection of Functional RNAs by Comparative Genomics

Journal of molecular biology, 2004-09, Vol.342 (1), p.19-30

2004

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Alignment of RNA base pairing probability matrices

Bioinformatics, 2004-09, Vol.20 (14), p.2222-2227

2004

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Complete suboptimal folding of RNA and the stability of secondary structures

BIOPOLYM, 1999-02, Vol.49 (2), p.145-165

1999

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Conserved RNA secondary structures in Flaviviridae genomes

Journal of general virology, 2004-05, Vol.85 (5), p.1113-1124

2004

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RNA folding at elementary step resolution

RNA (Cambridge), 2000-03, Vol.6 (3), p.325-338, Article S1355838200992161

2000

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Folding Kinetics of Large RNAs

Journal of molecular biology, 2008-05, Vol.379 (1), p.160-173

2008

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From sequences to shapes and back: a case study in RNA secondary structures

Proceedings of the Royal Society. B, Biological sciences, 1994-03, Vol.255 (1344), p.279-284

1994

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Designing optimal siRNA based on target site accessibility

Methods in molecular biology (Clifton, N.J.), 2010, Vol.623, p.137

2010

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Conserved RNA secondary structures in Picornaviridae genomes

Nucleic acids research, 2001-12, Vol.29 (24), p.5079-5089

2001

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Design of multistable RNA molecules

RNA (Cambridge), 2001-02, Vol.7 (2), p.254-265, Article S1355838201000863

2001

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Conserved RNA secondary structures in viral genomes: a survey

Bioinformatics, 2004-07, Vol.20 (10), p.1495-1499

2004

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Stochastic pairwise alignments

Bioinformatics, 2002-10, Vol.18 (suppl-2), p.S153-S160

2002

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Barrier Trees of Degenerate Landscapes

Zeitschrift für physikalische Chemie (Neue Folge), 2002-01, Vol.216 (2), p.155

2002

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Prediction of consensus RNA secondary structures including pseudoknots

IEEE/ACM transactions on computational biology and bioinformatics, 2004-04, Vol.1 (2), p.66-77

2004

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Fast folding and comparison of RNA secondary structures

Monatshefte für Chemie, 1994-02, Vol.125 (2), p.167-188

1994

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Multiple sequence alignments of partially coding nucleic acid sequences

BMC bioinformatics, 2005-06, Vol.6 (1), p.160-160, Article 160

2005

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Prediction of locally stable RNA secondary structures for genome-wide surveys

Vienna RNA secondary structure server

Fast and Reliable Prediction of Noncoding RNAs

Secondary Structure Prediction for Aligned RNA Sequences

Memory efficient folding algorithms for circular RNA secondary structures

Thermodynamics of RNA–RNA binding

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

Local RNA base pairing probabilities in large sequences

The expansion of the metazoan microRNA repertoire

Consensus Folding of Aligned Sequences as a New Measure for the Detection of Functional RNAs by Comparative Genomics

Alignment of RNA base pairing probability matrices

Complete suboptimal folding of RNA and the stability of secondary structures

Conserved RNA secondary structures in Flaviviridae genomes

RNA folding at elementary step resolution

Folding Kinetics of Large RNAs

From sequences to shapes and back: a case study in RNA secondary structures

Designing optimal siRNA based on target site accessibility

Conserved RNA secondary structures in Picornaviridae genomes

Design of multistable RNA molecules

Conserved RNA secondary structures in viral genomes: a survey

Stochastic pairwise alignments

Barrier Trees of Degenerate Landscapes

Prediction of consensus RNA secondary structures including pseudoknots

Fast folding and comparison of RNA secondary structures

Multiple sequence alignments of partially coding nucleic acid sequences

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