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Fascin- and α-Actinin-Bundled Networks Contain Intrinsic Structural Features that Drive Protein Sorting

Current biology, 2016-10, Vol.26 (20), p.2697-2706

2016

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Arp2/3 complex- and formin-mediated actin cytoskeleton networks facilitate actin binding protein sorting in fission yeast

European journal of cell biology, 2024-06, Vol.103 (2), p.151404, Article 151404

2024

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Mechanoregulated inhibition of formin facilitates contractile actomyosin ring assembly

Nature communications, 2017-09, Vol.8 (1), p.703-13, Article 703

2017

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Nonequilibrium phase diagrams for actomyosin networks

Soft matter, 2018, Vol.14 (37), p.7740-7747

2018

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Actin Filament Strain Promotes Severing and Cofilin Dissociation

Biophysical journal, 2017-06, Vol.112 (12), p.2624-2633

2017

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Competition between Tropomyosin, Fimbrin, and ADF/Cofilin drives their sorting to distinct actin filament networks

eLife, 2017-03, Vol.6

2017

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Ionic solids from common colloids

Nature (London), 2020-04, Vol.580 (7804), p.487-490

2020

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Exploring Valleys without Climbing Every Peak: More Efficient and Forgiving Metabasin Metadynamics via Robust On-the-Fly Bias Domain Restriction

Journal of chemical theory and computation, 2015-12, Vol.11 (12), p.5638-5650

2015

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A Burst of Genetic Innovation in Drosophila Actin-Related Proteins for Testis-Specific Function

Molecular biology and evolution, 2020-03, Vol.37 (3), p.757-772

2020

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Size-and-Shape Space Gaussian Mixture Models for Structural Clustering of Molecular Dynamics Trajectories

Journal of chemical theory and computation, 2022-05, Vol.18 (5), p.3218-3230

2022

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Reaction Coordinates for Conformational Transitions Using Linear Discriminant Analysis on Positions

Journal of chemical theory and computation, 2023-07, Vol.19 (14), p.4427-4435

2023

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Improved Prediction of Molecular Response to Pulling by Combining Force Tempering with Replica Exchange Methods

The journal of physical chemistry. B, 2024-01, Vol.128 (3), p.706-715

2024

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Catching actin proteins in action

Nature (London), 2022-11, Vol.611 (7935), p.241-243

2022

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Learning reaction coordinates for enhanced sampling directly using atomic positions

Biophysical journal, 2023-02, Vol.122 (3), p.335a-335a

2023

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Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture

Communications biology, 2021-09, Vol.4 (1), p.1136-1136, Article 1136

2021

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Correlation of local order with particle mobility in supercooled liquids is highly system dependent

Physical review letters, 2014-10, Vol.113 (15), p.157801-157801, Article 157801

2014

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Total synthesis of colloidal matter

Nature reviews. Materials, 2021-11, Vol.6 (11), p.1053-1069

2021

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A coarse-grained simulation model for colloidal self-assembly via explicit mobile binders

Soft matter, 2023-06, Vol.19 (23), p.4223-4236

2023

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A Versatile Framework for Simulating the Dynamic Mechanical Structure of Cytoskeletal Networks

Biophysical journal, 2017-07, Vol.113 (2), p.448-460

2017

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Molecular dynamics simulations support a multistep pathway for activation of branched actin filament nucleation by Arp2/3 complex

The Journal of biological chemistry, 2023-09, Vol.299 (9), p.105169-105169, Article 105169

2023

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Good Rates From Bad Coordinates: The Exponential Average Time-dependent Rate Approach

Journal of chemical theory and computation, 2024-07, Vol.20 (14), p.5901-5912

2024

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Quantifying Unbiased Conformational Ensembles from Biased Simulations Using ShapeGMM

Journal of chemical theory and computation, 2024-05, Vol.20 (9), p.3492-3502

2024

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Structure of Arp2/3 complex at a branched actin filament junction resolved by single-particle cryo-electron microscopy

Proceedings of the National Academy of Sciences - PNAS, 2022-05, Vol.119 (22), p.e2202723119-e2202723119

2022

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Promoting transparency and reproducibility in enhanced molecular simulations

Nature methods, 2019-08, Vol.16 (8), p.670-673

The PLUMED consortium

2019

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Neural potentials of proteins extrapolate beyond training data

The Journal of chemical physics, 2023-08, Vol.159 (8)

2023

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Fascin- and α-Actinin-Bundled Networks Contain Intrinsic Structural Features that Drive Protein Sorting

Arp2/3 complex- and formin-mediated actin cytoskeleton networks facilitate actin binding protein sorting in fission yeast

Mechanoregulated inhibition of formin facilitates contractile actomyosin ring assembly

Nonequilibrium phase diagrams for actomyosin networks

Actin Filament Strain Promotes Severing and Cofilin Dissociation

Competition between Tropomyosin, Fimbrin, and ADF/Cofilin drives their sorting to distinct actin filament networks

Ionic solids from common colloids

Exploring Valleys without Climbing Every Peak: More Efficient and Forgiving Metabasin Metadynamics via Robust On-the-Fly Bias Domain Restriction

A Burst of Genetic Innovation in Drosophila Actin-Related Proteins for Testis-Specific Function

Size-and-Shape Space Gaussian Mixture Models for Structural Clustering of Molecular Dynamics Trajectories

Reaction Coordinates for Conformational Transitions Using Linear Discriminant Analysis on Positions

Improved Prediction of Molecular Response to Pulling by Combining Force Tempering with Replica Exchange Methods

Catching actin proteins in action

Learning reaction coordinates for enhanced sampling directly using atomic positions

Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture

Correlation of local order with particle mobility in supercooled liquids is highly system dependent

Total synthesis of colloidal matter

A coarse-grained simulation model for colloidal self-assembly via explicit mobile binders

A Versatile Framework for Simulating the Dynamic Mechanical Structure of Cytoskeletal Networks

Molecular dynamics simulations support a multistep pathway for activation of branched actin filament nucleation by Arp2/3 complex

Good Rates From Bad Coordinates: The Exponential Average Time-dependent Rate Approach

Quantifying Unbiased Conformational Ensembles from Biased Simulations Using ShapeGMM

Structure of Arp2/3 complex at a branched actin filament junction resolved by single-particle cryo-electron microscopy

Promoting transparency and reproducibility in enhanced molecular simulations

Neural potentials of proteins extrapolate beyond training data

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