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Formation of a multi‐layered 3‐dimensional structure of the heterochromatin compartment during early mammalian development

Development, growth & differentiation, 2021-01, Vol.63 (1), p.5-17

2021

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Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization

Nature genetics, 2019-09, Vol.51 (9), p.1356-1368

2019

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Genome-wide stability of the DNA replication program in single mammalian cells

Nature genetics, 2019-03, Vol.51 (3), p.529-540

2019

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Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization

Biophysical journal, 2020-05, Vol.118 (9), p.2220-2228

2020

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Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

Genome research, 2010-06, Vol.20 (6), p.761

2010

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SAF-A promotes origin licensing and replication fork progression to ensure robust DNA replication

Journal of cell science, 2022-01, Vol.135 (2)

2022

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Replication timing and transcriptional control: beyond cause and effect—part II

Current opinion in genetics & development, 2009-04, Vol.19 (2), p.142-149

2009

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Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing

Nature protocols, 2020-12, Vol.15 (12), p.4058-4100

2020

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Global reorganization of replication domains during embryonic stem cell differentiation

PLoS biology, 2008-10, Vol.6 (10), p.e245-e245

2008

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DNA Replication Timing Enters the Single-Cell Era

Genes, 2019-03, Vol.10 (3), p.221

2019

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Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

Genome research, 2010-02, Vol.20 (2), p.155

2010

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The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis

Nature communications, 2019-08, Vol.10 (1), p.3778-15, Article 3778

2019

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G9a selectively represses a class of late-replicating genes at the nuclear periphery

Proceedings of the National Academy of Sciences - PNAS, 2009-11, Vol.106 (46), p.19363-19368

2009

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Highly rigid H3.1/H3.2-H3K9me3 domains set a barrier for cell fate reprogramming in trophoblast stem cells

Genes & development, 2022-01, Vol.36 (1-2), p.84-102

2022

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Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

Gigascience, 2020-01, Vol.9 (1)

2020

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Genome-scale analysis of replication timing: from bench to bioinformatics

Nature protocols, 2011-06, Vol.6 (6), p.870-895

2011

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Large-Scale Chromatin Rearrangements in Cancer

Cancers, 2022-05, Vol.14 (10), p.2384

2022

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Replication timing as an epigenetic mark

Epigenetics, 2009-02, Vol.4 (2), p.93-97

2009

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Dynamics of transcription-mediated conversion from euchromatin to facultative heterochromatin at the Xist promoter by Tsix

Cell reports (Cambridge), 2021-03, Vol.34 (13), p.108912-108912, Article 108912

2021

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Cell cycle dynamics and developmental dynamics of the 3D genome: toward linking the two timescales

Current opinion in genetics & development, 2022-04, Vol.73, p.101898-101898, Article 101898

2022

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Srf destabilizes cellular identity by suppressing cell-type-specific gene expression programs

Nature communications, 2018-04, Vol.9 (1), p.1387-15, Article 1387

2018

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Regulation of mammalian 3D genome organization and histone H3K9 dimethylation by H3K9 methyltransferases

Communications biology, 2021-05, Vol.4 (1), p.571-571, Article 571

2021

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ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data

BMC bioinformatics, 2008-12, Vol.9 (1), p.530-530, Article 530

2008

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Replication timing: a fingerprint for cell identity and pluripotency

PLoS computational biology, 2011-10, Vol.7 (10), p.e1002225-e1002225

2011

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The Xenopus receptor tyrosine kinase Xror2 modulates morphogenetic movements of the axial mesoderm and neuroectoderm via Wnt signaling

Development (Cambridge), 2002-11, Vol.129 (22), p.5227-5239

2002

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Formation of a multi‐layered 3‐dimensional structure of the heterochromatin compartment during early mammalian development

Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization

Genome-wide stability of the DNA replication program in single mammalian cells

Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

SAF-A promotes origin licensing and replication fork progression to ensure robust DNA replication

Replication timing and transcriptional control: beyond cause and effect—part II

Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing

Global reorganization of replication domains during embryonic stem cell differentiation

DNA Replication Timing Enters the Single-Cell Era

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis

G9a selectively represses a class of late-replicating genes at the nuclear periphery

Highly rigid H3.1/H3.2-H3K9me3 domains set a barrier for cell fate reprogramming in trophoblast stem cells

Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

Genome-scale analysis of replication timing: from bench to bioinformatics

Large-Scale Chromatin Rearrangements in Cancer

Replication timing as an epigenetic mark

Dynamics of transcription-mediated conversion from euchromatin to facultative heterochromatin at the Xist promoter by Tsix

Cell cycle dynamics and developmental dynamics of the 3D genome: toward linking the two timescales

Srf destabilizes cellular identity by suppressing cell-type-specific gene expression programs

Regulation of mammalian 3D genome organization and histone H3K9 dimethylation by H3K9 methyltransferases

ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data

Replication timing: a fingerprint for cell identity and pluripotency

The Xenopus receptor tyrosine kinase Xror2 modulates morphogenetic movements of the axial mesoderm and neuroectoderm via Wnt signaling

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