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Adaptive laboratory evolution of tolerance to dicarboxylic acids in Saccharomyces cerevisiae

Metabolic engineering, 2019-12, Vol.56, p.130-141

2019

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Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains

Microbial cell factories, 2019-01, Vol.18 (1), p.3-3, Article 3

2019

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A dual-reporter system for investigating and optimizing protein translation and folding in E. coli

Nature communications, 2021-10, Vol.12 (1), p.6093-6093, Article 6093

2021

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Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance

Metabolic engineering communications, 2020-12, Vol.11 (C), p.e00143-e00143, Article e00143

2020

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Isolation and characterization of the E. coli membrane protein production strain Mutant56(DE3)

Scientific reports, 2017-03, Vol.7 (1), p.45089-45089, Article 45089

2017

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Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica

Frontiers in genetics, 2019-08, Vol.10, p.747-747

2019

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Identification and Engineering of Transporters for Efficient Melatonin Production in Escherichia coli

Frontiers in microbiology, 2022-06, Vol.13, p.880847-880847

2022

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Evolution reveals a glutathione-dependent mechanism of 3-hydroxypropionic acid tolerance

Metabolic engineering, 2014-11, Vol.26, p.57-66

2014

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Combining Environmental and Economic Performance for Bioprocess Optimization

Trends in biotechnology (Regular ed.), 2020-11, Vol.38 (11), p.1203-1214

2020

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Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

Genome research, 2004-07, Vol.14 (7), p.1298

2004

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Aerobic Fermentation of d-Glucose by an Evolved Cytochrome Oxidase-Deficient Escherichia coli Strain

Applied and Environmental Microbiology, 2008-12, Vol.74 (24), p.7561-7569

2008

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Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction

PLoS computational biology, 2016-10, Vol.12 (10), p.e1005140-e1005140

2016

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Leveraging high-resolution omics data for predicting responses and adverse events to immune checkpoint inhibitors

Computational and structural biotechnology journal, 2023-01, Vol.21, p.3912-3919

2023

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Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations

Gigascience, 2019-04, Vol.8 (4)

2019

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Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

Genome Research, 2006-05, Vol.16 (5), p.627-635

2006

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OptCouple: Joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs

Metabolic engineering communications, 2019-06, Vol.8, p.e00087, Article e00087

2019

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Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector–Coding Sequence Junction

ACS synthetic biology, 2015-09, Vol.4 (9), p.959-965

2015

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Impact of Individual Mutations on Increased Fitness in Adaptively Evolved Strains of Escherichia coli

Journal of Bacteriology, 2008-07, Vol.190 (14), p.5087-5094

2008

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Reconstruction of biochemical networks in microorganisms

Nature reviews. Microbiology, 2009-02, Vol.7 (2), p.129-143

2009

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An automated workflow for multi-omics screening of microbial model organisms

NPJ systems biology and applications, 2023-05, Vol.9 (1), p.14-14, Article 14

2023

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Corrigendum: Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica

Frontiers in genetics, 2021-01, Vol.11, p.637738-637738

2021

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Connecting extracellular metabolomic measurements to intracellular flux states in yeast

BMC systems biology, 2009-03, Vol.3 (1), p.37-37, Article 37

2009

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Network-based prediction of human tissue-specific metabolism

Nature biotechnology, 2008-09, Vol.26 (9), p.1003-1010

2008

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The BioInnovation Institute as a catalyst for European life science startup creation

Nature biotechnology, 2022-08, Vol.40 (8), p.1175-1177

2022

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EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae

PloS one, 2016-03, Vol.11 (3), p.e0150394-e0150394

2016

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Adaptive laboratory evolution of tolerance to dicarboxylic acids in Saccharomyces cerevisiae

Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains

A dual-reporter system for investigating and optimizing protein translation and folding in E. coli

Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance

Isolation and characterization of the E. coli membrane protein production strain Mutant56(DE3)

Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica

Identification and Engineering of Transporters for Efficient Melatonin Production in Escherichia coli

Evolution reveals a glutathione-dependent mechanism of 3-hydroxypropionic acid tolerance

Combining Environmental and Economic Performance for Bioprocess Optimization

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

Aerobic Fermentation of d-Glucose by an Evolved Cytochrome Oxidase-Deficient Escherichia coli Strain

Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction

Leveraging high-resolution omics data for predicting responses and adverse events to immune checkpoint inhibitors

Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

OptCouple: Joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs

Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector–Coding Sequence Junction

Impact of Individual Mutations on Increased Fitness in Adaptively Evolved Strains of Escherichia coli

Reconstruction of biochemical networks in microorganisms

An automated workflow for multi-omics screening of microbial model organisms

Corrigendum: Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

Network-based prediction of human tissue-specific metabolism

The BioInnovation Institute as a catalyst for European life science startup creation

EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae

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