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Diffusion-driven looping provides a consistent framework for chromatin organization

PloS one, 2010-08, Vol.5 (8), p.e12218-e12218

2010

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Monte Carlo Simulation in Statistical Physics: An Introduction

Sixth edition., 2019

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Using Persistent Homology as a New Approach for Super-Resolution Localization Microscopy Data Analysis and Classification of γH2AX Foci/Clusters

International journal of molecular sciences, 2018-08, Vol.19 (8), p.2263

2018

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Physical nuclear organization: loops and entropy

Current opinion in cell biology, 2011-06, Vol.23 (3), p.332-337

Heermann, Dieter W

2011

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Chromatin folding--from biology to polymer models and back

Journal of cell science, 2011-03, Vol.124 (Pt 6), p.839-845

2011

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Topological interactions between ring polymers: Implications for chromatin loops

The Journal of chemical physics, 2010-01, Vol.132 (4), p.044904-044904

2010

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Elucidation of the Clustered Nano-Architecture of Radiation-Induced DNA Damage Sites and Surrounding Chromatin in Cancer Cells: A Single Molecule Localization Microscopy Approach

International journal of molecular sciences, 2021-03, Vol.22 (7), p.3636

2021

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The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of proVWX in E. coli

Nature communications, 2023-11, Vol.14 (1), p.7478-7478, Article 7478

2023

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Expression-dependent folding of interphase chromatin

PloS one, 2012-05, Vol.7 (5), p.e37525-e37525

2012

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Repulsive forces between looping chromosomes induce entropy-driven segregation

PloS one, 2011-01, Vol.6 (1), p.e14428-e14428

2011

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Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling

PLoS computational biology, 2014-10, Vol.10 (10), p.e1003877-e1003877

2014

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Radiation induced chromatin conformation changes analysed by fluorescent localization microscopy, statistical physics, and graph theory

PloS one, 2015-06, Vol.10 (6), p.e0128555-e0128555

2015

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Spatially confined folding of chromatin in the interphase nucleus

Proceedings of the National Academy of Sciences - PNAS, 2009-03, Vol.106 (10), p.3812-3817

2009

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Topological Analysis of γH2AX and MRE11 Clusters Detected by Localization Microscopy during X-ray-Induced DNA Double-Strand Break Repair

Cancers, 2021-11, Vol.13 (21), p.5561

2021

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Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage

BMC biology, 2021-11, Vol.19 (1), p.247-247, Article 247

2021

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How Chromatin Looping and Nuclear Envelope Attachment Affect Genome Organization in Eukaryotic Cell Nuclei

International Review of Cell and Molecular Biology, 2014, Vol.307, p.351-381

2014

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Author Correction to: Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage

BMC biology, 2022-02, Vol.20 (1), p.29-29, Article 29

2022

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Chromosome segregation by the Escherichia coli Min system

Molecular systems biology, 2013, Vol.9 (1), p.686-n/a

2013

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Robust detection and segmentation of cell nuclei in biomedical images based on a computational topology framework

Medical image analysis, 2017-05, Vol.38, p.90-103

2017

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Superstructure Detection in Nucleosome Distribution Shows Common Pattern within a Chromosome and within the Genome

Life (Basel, Switzerland), 2022-04, Vol.12 (4), p.541

2022

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Histone Depletion Facilitates Chromatin Loops on the Kilobasepair Scale

Biophysical journal, 2010-11, Vol.99 (9), p.2995-3001

2010

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Localization Microscopy Reveals Expression-Dependent Parameters of Chromatin Nanostructure

Biophysical journal, 2010-09, Vol.99 (5), p.1358-1367

2010

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A chromosomal loop anchor mediates bacterial genome organization

Nature genetics, 2022-02, Vol.54 (2), p.194-201

2022

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The role of nucleotide opening dynamics in facilitated target search by DNA-repair proteins

Biochimica et biophysica acta. Gene regulatory mechanisms, 2024-06, Vol.1867 (2), p.195026-195026, Article 195026

2024

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Computer Simulation Methods in Theoretical Physics

Heermann, Dieter W

1, 1990

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Diffusion-driven looping provides a consistent framework for chromatin organization

Monte Carlo Simulation in Statistical Physics: An Introduction

Using Persistent Homology as a New Approach for Super-Resolution Localization Microscopy Data Analysis and Classification of γH2AX Foci/Clusters

Physical nuclear organization: loops and entropy

Chromatin folding--from biology to polymer models and back

Topological interactions between ring polymers: Implications for chromatin loops

Elucidation of the Clustered Nano-Architecture of Radiation-Induced DNA Damage Sites and Surrounding Chromatin in Cancer Cells: A Single Molecule Localization Microscopy Approach

The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of proVWX in E. coli

Expression-dependent folding of interphase chromatin

Repulsive forces between looping chromosomes induce entropy-driven segregation

Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling

Radiation induced chromatin conformation changes analysed by fluorescent localization microscopy, statistical physics, and graph theory

Spatially confined folding of chromatin in the interphase nucleus

Topological Analysis of γH2AX and MRE11 Clusters Detected by Localization Microscopy during X-ray-Induced DNA Double-Strand Break Repair

Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage

How Chromatin Looping and Nuclear Envelope Attachment Affect Genome Organization in Eukaryotic Cell Nuclei

Author Correction to: Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage

Chromosome segregation by the Escherichia coli Min system

Robust detection and segmentation of cell nuclei in biomedical images based on a computational topology framework

Superstructure Detection in Nucleosome Distribution Shows Common Pattern within a Chromosome and within the Genome

Histone Depletion Facilitates Chromatin Loops on the Kilobasepair Scale

Localization Microscopy Reveals Expression-Dependent Parameters of Chromatin Nanostructure

A chromosomal loop anchor mediates bacterial genome organization

The role of nucleotide opening dynamics in facilitated target search by DNA-repair proteins

Computer Simulation Methods in Theoretical Physics

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