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Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3

Nature methods, 2021-12, Vol.18 (12), p.1515-1523

2021

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pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification

Nature communications, 2017-09, Vol.8 (1), p.438-14, Article 438

2017

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Identification of cross-linked peptides from complex samples

Nature methods, 2012-09, Vol.9 (9), p.904-906

2012

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Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers

Nature communications, 2019-09, Vol.10 (1), p.3911-11, Article 3911

2019

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Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states

eLife, 2016-03, Vol.5

2016

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pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3

Scientific reports, 2016-05, Vol.6 (1), p.25102-25102, Article 25102

2016

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pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry

Rapid communications in mass spectrometry, 2007-09, Vol.21 (18), p.2985-2991

2007

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On Guaranteed Smooth Switching for Buffered Crossbar Switches

IEEE/ACM transactions on networking, 2008-06, Vol.16 (3), p.718-731

2008

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pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning

Analytical chemistry (Washington), 2017-12, Vol.89 (23), p.12690-12697

2017

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Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate

Bioinformatics, 2010-06, Vol.26 (12), p.i399-i406

2010

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Microfluidic preparation of surfactant-free ultrafine DAAF with tunable particle size for insensitive initiator explosives

Defence technology, 2024-09, Vol.39, p.42-52

2024

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MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning

Analytical chemistry (Washington), 2019-08, Vol.91 (15), p.9724-9731

2019

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Interaction and assembly of the DNA replication core proteins of Kaposi's sarcoma-associated herpesvirus

Microbiology spectrum, 2023-12, Vol.11 (6), p.e0225423-e0225423

2023

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pParse: A method for accurate determination of monoisotopic peaks in high-resolution mass spectra

Proteomics (Weinheim), 2012-01, Vol.12 (2), p.226-235

2012

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pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework

Bioinformatics, 2019-07, Vol.35 (14), p.i183-i190

2019

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Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine

Nature biotechnology, 2018-12, Vol.36 (11), p.1059-1061

2018

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Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin)

Proceedings of the National Academy of Sciences - PNAS, 2012-01, Vol.109 (5), p.1542-1547

2012

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A Strategy for Precise and Large Scale Identification of Core Fucosylated Glycoproteins

Molecular & cellular proteomics, 2009-05, Vol.8 (5), p.913-923

2009

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FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space

Bioinformatics, 2008-09, Vol.24 (18), p.1994-2001

2008

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Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing

Rapid communications in mass spectrometry, 2010-03, Vol.24 (6), p.807-814

2010

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The beneficial effect of Batroxobin on blood loss reduction in spinal fusion surgery: a prospective, randomized, double-blind, placebo-controlled study

Archives of orthopaedic and trauma surgery, 2015-04, Vol.135 (4), p.491-497

2015

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Mapping native disulfide bonds at a proteome scale

Nature methods, 2015-04, Vol.12 (4), p.329-331

2015

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pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power

Journal of proteomics, 2022-01, Vol.251, p.104414-104414, Article 104414

2022

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Using pLink to Analyze Cross‐Linked Peptides

Current Protocols in Bioinformatics, 2015-03, Vol.49 (1), p.8.21.1-8.21.19

2015

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pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning

Journal of proteome research, 2021-05, Vol.20 (5), p.2570-2582

2021

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Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3

pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification

Identification of cross-linked peptides from complex samples

Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers

Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states

pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3

pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry

On Guaranteed Smooth Switching for Buffered Crossbar Switches

pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning

Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate

Microfluidic preparation of surfactant-free ultrafine DAAF with tunable particle size for insensitive initiator explosives

MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning

Interaction and assembly of the DNA replication core proteins of Kaposi's sarcoma-associated herpesvirus

pParse: A method for accurate determination of monoisotopic peaks in high-resolution mass spectra

pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework

Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine

Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin)

A Strategy for Precise and Large Scale Identification of Core Fucosylated Glycoproteins

FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space

Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing

The beneficial effect of Batroxobin on blood loss reduction in spinal fusion surgery: a prospective, randomized, double-blind, placebo-controlled study

Mapping native disulfide bonds at a proteome scale

pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power

Using pLink to Analyze Cross‐Linked Peptides

pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning

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