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Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

Nature (London), 2011-06, Vol.474 (7349), p.92-95

2011

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Spontaneous network formation among cooperative RNA replicators

Nature (London), 2012-11, Vol.491 (7422), p.72-77

2012

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Genotype network intersections promote evolutionary innovation

PLoS biology, 2019-05, Vol.17 (5), p.e3000300

2019

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A multiplexed, automated evolution pipeline enables scalable discovery and characterization of biosensors

Nature communications, 2021-03, Vol.12 (1), p.1437-15, Article 1437

2021

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An alternative approach to nucleic acid memory

Nature communications, 2021-04, Vol.12 (1), p.2371-10, Article 2371

2021

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Low Intensity Vibrations Augment Mesenchymal Stem Cell Proliferation and Differentiation Capacity during in vitro Expansion

Scientific reports, 2020-06, Vol.10 (1), p.9369-9369, Article 9369

2020

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RNA sequence to structure analysis from comprehensive pairwise mutagenesis of multiple self-cleaving ribozymes

eLife, 2023-01, Vol.12

2023

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Intramolecular phenotypic capacitance in a modular RNA molecule

Proceedings of the National Academy of Sciences - PNAS, 2015-10, Vol.112 (40), p.12444-12449

2015

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Predicting higher-order mutational effects in an RNA enzyme by machine learning of high-throughput experimental data

Frontiers in molecular biosciences, 2022-08, Vol.9, p.893864-893864

2022

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Systems Chemistry on Ribozyme Self-Construction: Evidence for Anabolic Autocatalysis in a Recombination Network

Angewandte Chemie (International ed.), 2008-01, Vol.47 (44), p.8424-8428

2008

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Directional selection causes decanalization in a group I ribozyme

PloS one, 2012-09, Vol.7 (9), p.e45351-e45351

2012

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Dynamic RNA Fitness Landscapes of a Group I Ribozyme during Changes to the Experimental Environment

Molecular biology and evolution, 2022-03, Vol.39 (3)

2022

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Empirical analysis of RNA robustness and evolution using high-throughput sequencing of ribozyme reactions

Methods (San Diego, Calif.), 2016-08, Vol.106, p.97-104

Hayden, Eric J.

2016

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Experimental Resurrection of Ancestral Mammalian CPEB3 Ribozymes Reveals Deep Functional Conservation

Molecular biology and evolution, 2021-07, Vol.38 (7), p.2843-2853

2021

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Template-Directed RNA Polymerization: The Taming of the Milieu

Chembiochem : a European journal of chemical biology, 2011-12, Vol.12 (18), p.2727-2728

2011

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Negative Epistasis in Experimental RNA Fitness Landscapes

Journal of molecular evolution, 2017-12, Vol.85 (5-6), p.159-168

2017

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DNA-PAINT Probe Modifications Support High-Resolution Imaging with Shorter Binding Domains

ACS nano, 2024-08, Vol.18 (33), p.22369-22377

2024

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Hidden intermediates in Mango III RNA aptamer folding revealed by pressure perturbation

Biophysical journal, 2022-02, Vol.121 (3), p.421-429

2022

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Double-stemmed and split structural variants of fluorescent RNA Mango aptamers

RNA (Cambridge), 2023-09, Vol.29 (9), p.1355-1364

2023

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Environmental change exposes beneficial epistatic interactions in a catalytic RNA

Proceedings of the Royal Society. B, Biological sciences, 2012-09, Vol.279 (1742), p.3418-3425

2012

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Ribonucleoprotein purification and characterization using RNA Mango

RNA (Cambridge), 2017-10, Vol.23 (10), p.1592-1599

2017

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Phased nucleotide inserts for sequencing low-diversity RNA samples from in vitro selection experiments

RNA (Cambridge), 2020-08, Vol.26 (8), p.1060-1068

2020

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Unifying community detection across scales from genomes to landscapes

Oikos, 2021-06, Vol.130 (6), p.831-843

2021

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Primers to highly conserved elements optimized for qPCR‐based telomere length measurement in vertebrates

Molecular ecology resources, 2021-01, Vol.21 (1), p.59-67

2021

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The Effects of Stabilizing and Directional Selection on Phenotypic and Genotypic Variation in a Population of RNA Enzymes

Journal of molecular evolution, 2014-02, Vol.78 (2), p.101-108

2014

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Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

Spontaneous network formation among cooperative RNA replicators

Genotype network intersections promote evolutionary innovation

A multiplexed, automated evolution pipeline enables scalable discovery and characterization of biosensors

An alternative approach to nucleic acid memory

Low Intensity Vibrations Augment Mesenchymal Stem Cell Proliferation and Differentiation Capacity during in vitro Expansion

RNA sequence to structure analysis from comprehensive pairwise mutagenesis of multiple self-cleaving ribozymes

Intramolecular phenotypic capacitance in a modular RNA molecule

Predicting higher-order mutational effects in an RNA enzyme by machine learning of high-throughput experimental data

Systems Chemistry on Ribozyme Self-Construction: Evidence for Anabolic Autocatalysis in a Recombination Network

Directional selection causes decanalization in a group I ribozyme

Dynamic RNA Fitness Landscapes of a Group I Ribozyme during Changes to the Experimental Environment

Empirical analysis of RNA robustness and evolution using high-throughput sequencing of ribozyme reactions

Experimental Resurrection of Ancestral Mammalian CPEB3 Ribozymes Reveals Deep Functional Conservation

Template-Directed RNA Polymerization: The Taming of the Milieu

Negative Epistasis in Experimental RNA Fitness Landscapes

DNA-PAINT Probe Modifications Support High-Resolution Imaging with Shorter Binding Domains

Hidden intermediates in Mango III RNA aptamer folding revealed by pressure perturbation

Double-stemmed and split structural variants of fluorescent RNA Mango aptamers

Environmental change exposes beneficial epistatic interactions in a catalytic RNA

Ribonucleoprotein purification and characterization using RNA Mango

Phased nucleotide inserts for sequencing low-diversity RNA samples from in vitro selection experiments

Unifying community detection across scales from genomes to landscapes

Primers to highly conserved elements optimized for qPCR‐based telomere length measurement in vertebrates

The Effects of Stabilizing and Directional Selection on Phenotypic and Genotypic Variation in a Population of RNA Enzymes

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