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PlasmidFinder and In Silico pMLST: Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS)

Methods in molecular biology (Clifton, N.J.), 2020-01, Vol.2075, p.285

2020

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Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli

Journal of clinical microbiology, 2014-05, Vol.52 (5), p.1501-1510

2014

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A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58

Nature communications, 2022-02, Vol.13 (1), p.683-15, Article 683

2022

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Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Journal of Clinical Microbiology, 2012-04, Vol.50 (4), p.1355-1361

2012

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Benchmarking of methods for genomic taxonomy

Journal of clinical microbiology, 2014-05, Vol.52 (5), p.1529-1539

2014

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Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015

Euro surveillance : bulletin européen sur les maladies transmissibles, 2015-12, Vol.20 (49), p.1

2015

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SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data

mSphere, 2018-01, Vol.3 (1)

2018

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A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance

PloS one, 2016-06, Vol.11 (6), p.e0157718-e0157718

2016

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Molecular Methods for Detection of Antimicrobial Resistance

Microbiology spectrum, 2017-12, Vol.5 (6)

2017

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Novel mcr-3 variant, encoding mobile colistin resistance, in an ST131 Escherichia coli isolate from bloodstream infection, Denmark, 2014

Euro surveillance : bulletin européen sur les maladies transmissibles, 2017-08, Vol.22 (31), p.5

2017

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Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae

Plasmid, 2012-07, Vol.68 (1), p.43-50

2012

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Livestock origin for a human pandemic clone of community-associated methicillin-resistant Staphylococcus aureus

mBio, 2013-08, Vol.4 (4)

2013

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Appearance of vanD-positive Enterococcus faecium in a tertiary hospital in the Netherlands: prevalence of vanC and vanD in hospitalized patients

Scientific reports, 2019-05, Vol.9 (1), p.6949-6949, Article 6949

2019

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Metallic copper corrosion rates, moisture content, and growth medium influence survival of copper ion-resistant bacteria

Applied microbiology and biotechnology, 2011-03, Vol.89 (6), p.1963-1970

2011

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Detection of mcr-1 -encoding plasmid-mediated colistin-resistant Salmonella isolates from human infection in Denmark

International journal of antimicrobial agents, 2017-02, Vol.49 (2), p.261-262

2017

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Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance

Scientific reports, 2015-07, Vol.5 (1), p.11444-11444, Article 11444

2015

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Multilocus sequence typing of IncN plasmids

Journal of antimicrobial chemotherapy, 2011-09, Vol.66 (9), p.1987-1991

2011

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Evaluation and validation of laboratory procedures for the surveillance of ESBL-, AmpC-, and carbapenemase-producing Escherichia coli from fresh meat and caecal samples

Frontiers in microbiology, 2023-08, Vol.14, p.1229542-1229542

2023

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Recommendations To Address the Difficulties Encountered When Determining Linezolid Resistance from Whole-Genome Sequencing Data

Antimicrobial agents and chemotherapy, 2018-08, Vol.62 (8)

2018

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The ICU environment contributes to the endemicity of the " Serratia marcescens complex" in the hospital setting

mBio, 2024-05, Vol.15 (5), p.e0305423-e0305423

2024

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Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

mSystems, 2016-05, Vol.1 (3)

2016

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Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark

Emerging infectious diseases, 2016-05, Vol.22 (5), p.900-902

2016

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Comparison of IncK-blaCMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany

Antibiotics (Basel), 2024-04, Vol.13 (4), p.349

2024

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PlasmidFinder and In Silico pMLST: Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS)

Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli

A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Benchmarking of methods for genomic taxonomy

Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015

SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data

A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance

Molecular Methods for Detection of Antimicrobial Resistance

Novel mcr-3 variant, encoding mobile colistin resistance, in an ST131 Escherichia coli isolate from bloodstream infection, Denmark, 2014

Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock

Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones

Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae

Livestock origin for a human pandemic clone of community-associated methicillin-resistant Staphylococcus aureus

Appearance of vanD-positive Enterococcus faecium in a tertiary hospital in the Netherlands: prevalence of vanC and vanD in hospitalized patients

Metallic copper corrosion rates, moisture content, and growth medium influence survival of copper ion-resistant bacteria

Detection of mcr-1 -encoding plasmid-mediated colistin-resistant Salmonella isolates from human infection in Denmark

Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance

Multilocus sequence typing of IncN plasmids

Evaluation and validation of laboratory procedures for the surveillance of ESBL-, AmpC-, and carbapenemase-producing Escherichia coli from fresh meat and caecal samples

Recommendations To Address the Difficulties Encountered When Determining Linezolid Resistance from Whole-Genome Sequencing Data

The ICU environment contributes to the endemicity of the " Serratia marcescens complex" in the hospital setting

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark

Comparison of IncK-blaCMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany

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