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Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale

BMC bioinformatics, 2015-07, Vol.16 (1), p.227-227, Article 227

Girgis, Hani Z

2015

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MeShClust v3.0: high-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores

BMC genomics, 2022-06, Vol.23 (1), p.423-423, Article 423

Girgis, Hani Z

2022

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Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

Mobile DNA, 2024-04, Vol.15 (1), p.8-8, Article 8

2024

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Benchmarking of alignment-free sequence comparison methods

Genome Biology, 2019-07, Vol.20 (1), p.144-144, Article 144

2019

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LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo

BMC genomics, 2019-06, Vol.20 (1), p.450-450, Article 450

2019

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Onset of the wave turbulence description of the longtime behavior of the nonlinear Schrödinger equation

Inventiones mathematicae, 2021-09, Vol.225 (3), p.787-855

2021

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Formulation Design, Statistical Optimization, and In Vitro Evaluation of a Naringenin Nanoemulsion to Enhance Apoptotic Activity in A549 Lung Cancer Cells

Pharmaceuticals (Basel, Switzerland), 2020-07, Vol.13 (7), p.152

2020

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Clinical cure with ceftriaxone versus ceftaroline or ceftobiprole in the treatment of staphylococcal pneumonia: a systematic review and meta-analysis

International journal of antimicrobial agents, 2019-08, Vol.54 (2), p.149-153

2019

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Hypermethylation of CpG Islands and Shores around Specific MicroRNAs and Mirtrons Is Associated with the Phenotype and Presence of Bladder Cancer

Clinical cancer research, 2011-03, Vol.17 (6), p.1287-1296

2011

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Primary prevention of depression in head and neck cancer patients: a scoping review

European archives of oto-rhino-laryngology, 2023-04, Vol.280 (4), p.1547-1554

2023

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A survey and evaluations of histogram-based statistics in alignment-free sequence comparison

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1222-1237

2019

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Anti-Helicobacter, Antitubercular and Cytotoxic Activities of Scalaranes from the Red Sea Sponge Hyrtios erectus

Molecules (Basel, Switzerland), 2018-04, Vol.23 (4), p.978

2018

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Psammaceratin A: A Cytotoxic Psammaplysin Dimer Featuring an Unprecedented (2Z,3Z)-2,3-Bis(aminomethylene)succinamide Backbone from the Red Sea Sponge Pseudoceratina arabica

Marine drugs, 2021-07, Vol.19 (8), p.433

2021

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Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models

Bioinformatics, 2020-01, Vol.36 (2), p.380-387

2020

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Capsaicin ameliorate pulmonary fibrosis via antioxidant Nrf-2/ PPAR- γ pathway activation and inflammatory TGF-β1/ NF-κB/COX II pathway inhibition

Frontiers in pharmacology, 2024-02, Vol.15, p.1333715-1333715

2024

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Repurposing of Some Natural Product Isolates as SARS-COV-2 Main Protease Inhibitors via In Vitro Cell Free and Cell-Based Antiviral Assessments and Molecular Modeling Approaches

Pharmaceuticals (Basel, Switzerland), 2021-03, Vol.14 (3), p.213

2021

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Effective Dynamics of the Nonlinear Schrödinger Equation on Large Domains

Communications on pure and applied mathematics, 2018-07, Vol.71 (7), p.1407-1460

2018

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Plumbagin-Loaded Glycerosome Gel as Topical Delivery System for Skin Cancer Therapy

Polymers, 2021-03, Vol.13 (6), p.923

2021

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In Vitro Antimycobacterial Activity and Physicochemical Characterization of Diaryl Ether Triclosan Analogues as Potential InhA Reductase Inhibitors

Molecules (Basel, Switzerland), 2020-07, Vol.25 (14), p.3125

2020

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Optimization of Hyaluronate-Based Liposomes to Augment the Oral Delivery and the Bioavailability of Berberine

Materials, 2021-10, Vol.14 (19), p.5759

2021

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HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures

BMC bioinformatics, 2018-09, Vol.19 (1), p.310-310, Article 310

2018

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Prophylactic Central Neck Dissection for Clinically Node‐Negative Papillary Thyroid Carcinoma

The Laryngoscope, 2022-06, Vol.132 (6), p.1320-1328

2022

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Histopathological predictors of lymph node metastasis in oral cavity squamous cell carcinoma: a systematic review and meta-analysis

Frontiers in oncology, 2024-05, Vol.14, p.1401211-1401211

2024

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Human papillomavirus knowledge and vaccine acceptability among male medical students in Saudi Arabia

Human vaccines & immunotherapeutics, 2021-07, Vol.17 (7), p.1968-1974

2021

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Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale

MeShClust v3.0: high-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores

Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

Benchmarking of alignment-free sequence comparison methods

LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo

Onset of the wave turbulence description of the longtime behavior of the nonlinear Schrödinger equation

Formulation Design, Statistical Optimization, and In Vitro Evaluation of a Naringenin Nanoemulsion to Enhance Apoptotic Activity in A549 Lung Cancer Cells

Decellularised extracellular matrix-derived peptides from neural retina and retinal pigment epithelium enhance the expression of synaptic markers and light responsiveness of human pluripotent stem cell derived retinal organoids

Clinical cure with ceftriaxone versus ceftaroline or ceftobiprole in the treatment of staphylococcal pneumonia: a systematic review and meta-analysis

Hypermethylation of CpG Islands and Shores around Specific MicroRNAs and Mirtrons Is Associated with the Phenotype and Presence of Bladder Cancer

Primary prevention of depression in head and neck cancer patients: a scoping review

A survey and evaluations of histogram-based statistics in alignment-free sequence comparison

Anti-Helicobacter, Antitubercular and Cytotoxic Activities of Scalaranes from the Red Sea Sponge Hyrtios erectus

Psammaceratin A: A Cytotoxic Psammaplysin Dimer Featuring an Unprecedented (2Z,3Z)-2,3-Bis(aminomethylene)succinamide Backbone from the Red Sea Sponge Pseudoceratina arabica

Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models

Capsaicin ameliorate pulmonary fibrosis via antioxidant Nrf-2/ PPAR- γ pathway activation and inflammatory TGF-β1/ NF-κB/COX II pathway inhibition

Repurposing of Some Natural Product Isolates as SARS-COV-2 Main Protease Inhibitors via In Vitro Cell Free and Cell-Based Antiviral Assessments and Molecular Modeling Approaches

Effective Dynamics of the Nonlinear Schrödinger Equation on Large Domains

Plumbagin-Loaded Glycerosome Gel as Topical Delivery System for Skin Cancer Therapy

In Vitro Antimycobacterial Activity and Physicochemical Characterization of Diaryl Ether Triclosan Analogues as Potential InhA Reductase Inhibitors

Optimization of Hyaluronate-Based Liposomes to Augment the Oral Delivery and the Bioavailability of Berberine

HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures

Prophylactic Central Neck Dissection for Clinically Node‐Negative Papillary Thyroid Carcinoma

Histopathological predictors of lymph node metastasis in oral cavity squamous cell carcinoma: a systematic review and meta-analysis

Human papillomavirus knowledge and vaccine acceptability among male medical students in Saudi Arabia

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