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Host-specific plasmid evolution explains the variable spread of clinical antibiotic-resistance plasmids

Proceedings of the National Academy of Sciences - PNAS, 2023-04, Vol.120 (15), p.e2212147120-e2212147120

2023

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Resident microbial communities inhibit growth and antibiotic-resistance evolution of Escherichia coli in human gut microbiome samples

PLoS biology, 2020-04, Vol.18 (4), p.e3000465

2020

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Host-parasite coevolutionary arms races give way to fluctuating selection

Ecology letters, 2011-07, Vol.14 (7), p.635-642

2011

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Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis

PLoS biology, 2019-05, Vol.17 (5), p.e3000265-e3000265

2019

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Effects of Sequential and Simultaneous Applications of Bacteriophages on Populations of Pseudomonas aeruginosa In Vitro and in Wax Moth Larvae

Applied and Environmental Microbiology, 2012-08, Vol.78 (16), p.5646-5652

2012

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The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts

Nature reviews. Genetics, 2010-06, Vol.11 (6), p.405-414

2010

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Bacteria‐Phage Coevolution and the Emergence of Generalist Pathogens

The American naturalist, 2011-01, Vol.177 (1), p.44-53

2011

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Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria

Molecular biology and evolution, 2016-03, Vol.33 (3), p.770-782

2016

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Evolution of honey resistance in experimental populations of bacteria depends on the type of honey and has no major side effects for antibiotic susceptibility

Evolutionary applications, 2021-05, Vol.14 (5), p.1314-1327

2021

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The cost of antibiotic resistance depends on evolutionary history in Escherichia coli

BMC evolutionary biology, 2013-08, Vol.13 (1), p.163

2013

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Fitness benefits to bacteria of carrying prophages and prophage-encoded antibiotic-resistance genes peak in different environments

Evolution, 2021-02, Vol.75 (2), p.515-528

2021

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Hypermutability and Compensatory Adaptation in Antibiotic‐Resistant Bacteria

The American naturalist, 2010-09, Vol.176 (3), p.303-311

2010

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Genetic basis of infectivity evolution in a bacteriophage

Molecular ecology, 2011-03, Vol.20 (5), p.981-989

2011

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Collateral Sensitivity Interactions between Antibiotics Depend on Local Abiotic Conditions

mSystems, 2021-12, Vol.6 (6), p.e0105521-e0105521

2021

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Exposure to lysed bacteria can promote or inhibit growth of neighboring live bacteria depending on local abiotic conditions

FEMS microbiology ecology, 2022-03, Vol.98 (2)

2022

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Diversity–disturbance relationships: frequency and intensity interact

Biology letters (2005), 2012-10, Vol.8 (5), p.768-771

2012

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Measuring Coevolutionary Dynamics in Species-Rich Communities

Trends in ecology & evolution (Amsterdam), 2020-06, Vol.35 (6), p.539-550

2020

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Mutational neighbourhood and mutation supply rate constrain adaptation in Pseudomonas aeruginosa

Proceedings of the Royal Society. B, Biological sciences, 2010-02, Vol.277 (1681), p.643-650

2010

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Microbial community composition interacts with local abiotic conditions to drive colonization resistance in human gut microbiome samples

Proceedings of the Royal Society. B, Biological sciences, 2021-03, Vol.288 (1947), p.20203106, Article 20203106

2021

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Community composition of bacteria isolated from Swiss banknotes varies depending on collection environment

Molecular ecology, 2023-05, Vol.32 (10), p.2619-2632

2023

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In Vitro Gut Modeling as a Tool for Adaptive Evolutionary Engineering of Lactiplantibacillus plantarum

mSystems, 2021-04, Vol.6 (2)

2021

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How does resource supply affect evolutionary diversification?

Proceedings of the Royal Society. B, Biological sciences, 2007-01, Vol.274 (1606), p.73-78

2007

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Experimental evolution and bacterial resistance: (co)evolutionary costs and trade-offs as opportunities in phage therapy research

Bacteriophage, 2015-04, Vol.5 (2), p.e1050153-e1050153

2015

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Antibiotic-degrading resistance changes bacterial community structure via species-specific responses

The ISME Journal, 2023-09, Vol.17 (9), p.1495-1503

2023

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Rapid decline of adaptation of Pseudomonas fluorescens to soil biotic environment

Biology letters (2005), 2022-03, Vol.18 (3), p.20210593-20210593

2022

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Host-specific plasmid evolution explains the variable spread of clinical antibiotic-resistance plasmids

Resident microbial communities inhibit growth and antibiotic-resistance evolution of Escherichia coli in human gut microbiome samples

Host-parasite coevolutionary arms races give way to fluctuating selection

Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis

Effects of Sequential and Simultaneous Applications of Bacteriophages on Populations of Pseudomonas aeruginosa In Vitro and in Wax Moth Larvae

The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts

Bacteria‐Phage Coevolution and the Emergence of Generalist Pathogens

Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria

Evolution of honey resistance in experimental populations of bacteria depends on the type of honey and has no major side effects for antibiotic susceptibility

The cost of antibiotic resistance depends on evolutionary history in Escherichia coli

Fitness benefits to bacteria of carrying prophages and prophage-encoded antibiotic-resistance genes peak in different environments

Hypermutability and Compensatory Adaptation in Antibiotic‐Resistant Bacteria

Genetic basis of infectivity evolution in a bacteriophage

Collateral Sensitivity Interactions between Antibiotics Depend on Local Abiotic Conditions

Exposure to lysed bacteria can promote or inhibit growth of neighboring live bacteria depending on local abiotic conditions

Diversity–disturbance relationships: frequency and intensity interact

Measuring Coevolutionary Dynamics in Species-Rich Communities

Mutational neighbourhood and mutation supply rate constrain adaptation in Pseudomonas aeruginosa

Microbial community composition interacts with local abiotic conditions to drive colonization resistance in human gut microbiome samples

Community composition of bacteria isolated from Swiss banknotes varies depending on collection environment

In Vitro Gut Modeling as a Tool for Adaptive Evolutionary Engineering of Lactiplantibacillus plantarum

How does resource supply affect evolutionary diversification?

Experimental evolution and bacterial resistance: (co)evolutionary costs and trade-offs as opportunities in phage therapy research

Antibiotic-degrading resistance changes bacterial community structure via species-specific responses

Rapid decline of adaptation of Pseudomonas fluorescens to soil biotic environment

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