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RUBic: rapid unsupervised biclustering

BMC bioinformatics, 2023-11, Vol.24 (1), p.1-435, Article 435

2023

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Structural Variants and Implicated Processes Associated with Familial Tourette Syndrome

International journal of molecular sciences, 2024-06, Vol.25 (11), p.5758

2024

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PFP-GO: Integrating protein sequence, domain and protein-protein interaction information for protein function prediction using ranked GO terms

Frontiers in genetics, 2022-09, Vol.13, p.969915-969915

2022

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Use of in silico approaches, synthesis and profiling of Pan-filovirus GP-1,2 preprotein specific antibodies

Briefings in functional genomics, 2024-04

2024

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ML-DTD: Machine Learning-Based Drug Target Discovery for the Potential Treatment of COVID-19

Vaccines (Basel), 2022-09, Vol.10 (10), p.1643

2022

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RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data

International journal of molecular sciences, 2021-09, Vol.22 (18), p.9901

2021

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Assessment of GO-Based Protein Interaction Affinities in the Large-Scale Human-Coronavirus Family Interactome

Vaccines (Basel), 2023-02, Vol.11 (3), p.549

2023

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Review of computational methods for virus–host protein interaction prediction: a case study on novel Ebola–human interactions

Briefings in functional genomics, 2017-09, Vol.17 (6), p.381-391

2017

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S-Palmitoylation of Synaptic Proteins as a Novel Mechanism Underlying Sex-Dependent Differences in Neuronal Plasticity

International journal of molecular sciences, 2021-06, Vol.22 (12), p.6253

2021

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Rule-Based Pruning and In Silico Identification of Essential Proteins in Yeast PPIN

Cells (Basel, Switzerland), 2022-08, Vol.11 (17), p.2648

2022

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A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction

Briefings in functional genomics, 2024-09, Vol.23 (5), p.538-548

2024

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Drug repurposing for COVID-19 using computational screening: Is Fostamatinib/R406 a potential candidate?

Methods (San Diego, Calif.), 2022-07, Vol.203, p.564-574

2022

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Computational modeling of human-nCoV protein-protein interaction network

Methods (San Diego, Calif.), 2022-07, Vol.203, p.488-497

2022

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Aggregated network centrality shows non-random structure of genomic and proteomic networks

Methods (San Diego, Calif.), 2020-10, Vol.181-182, p.5-14

2020

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Prediction of chromatin looping using deep hybrid learning (DHL)

Quantitative biology, 2023-06, Vol.11 (2), p.155-162

2023

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JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment

IEEE/ACM transactions on computational biology and bioinformatics, 2022-01, Vol.19 (1), p.531-542

2022

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Bio-inspired cryptosystem with DNA cryptography and neural networks

Journal of systems architecture, 2019-03, Vol.94, p.24-31

2019

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A survey on Ebola genome and current trends in computational research on the Ebola virus

Briefings in functional genomics, 2018-11, Vol.17 (6), p.374-380

2018

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FuzzyPPI: Large-Scale Interaction of Human Proteome at Fuzzy Semantic Space

IEEE transactions on big data, 2024, p.1-12

2024

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3gClust: Human Protein Cluster Analysis

IEEE/ACM transactions on computational biology and bioinformatics, 2019-11, Vol.16 (6), p.1773-1784

2019

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ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model

Pattern Recognition and Machine Intelligence, 2023, Vol.14301, p.871-878

2023

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Expression of Assimilatory Nitrate and Nitrite Reductase of Rhizobium meliloti

Indian journal of microbiology research, 2015-07, Vol.2 (3), p.133

2015

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Analysis of Large-Scale Human Protein Sequences Using an Efficient Spark-Based DBSCAN Algorithm

Proceedings of International Conference on Frontiers in Computing and Systems, 2020, Vol.1255, p.601-609

2020

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Prediction of Thyroid Cancer Genes Using an Ensemble of Post Translational Modification, Semantic and Structural Similarity Based Clustering Results

Pattern Recognition and Machine Intelligence, 2017, Vol.10597, p.418-423

2017

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DeConPPI: Deep Consensus-Based Prediction of Protein-Protein Interactions

Proceedings of International Conference on Frontiers in Computing and Systems, 2023, Vol.690, p.485-493

2023

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RUBic: rapid unsupervised biclustering

Structural Variants and Implicated Processes Associated with Familial Tourette Syndrome

PFP-GO: Integrating protein sequence, domain and protein-protein interaction information for protein function prediction using ranked GO terms

Use of in silico approaches, synthesis and profiling of Pan-filovirus GP-1,2 preprotein specific antibodies

ML-DTD: Machine Learning-Based Drug Target Discovery for the Potential Treatment of COVID-19

RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data

Assessment of GO-Based Protein Interaction Affinities in the Large-Scale Human-Coronavirus Family Interactome

Review of computational methods for virus–host protein interaction prediction: a case study on novel Ebola–human interactions

S-Palmitoylation of Synaptic Proteins as a Novel Mechanism Underlying Sex-Dependent Differences in Neuronal Plasticity

Rule-Based Pruning and In Silico Identification of Essential Proteins in Yeast PPIN

A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction

Drug repurposing for COVID-19 using computational screening: Is Fostamatinib/R406 a potential candidate?

Computational modeling of human-nCoV protein-protein interaction network

Aggregated network centrality shows non-random structure of genomic and proteomic networks

Prediction of chromatin looping using deep hybrid learning (DHL)

JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment

Bio-inspired cryptosystem with DNA cryptography and neural networks

A survey on Ebola genome and current trends in computational research on the Ebola virus

FuzzyPPI: Large-Scale Interaction of Human Proteome at Fuzzy Semantic Space

3gClust: Human Protein Cluster Analysis

ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model

Expression of Assimilatory Nitrate and Nitrite Reductase of Rhizobium meliloti

Analysis of Large-Scale Human Protein Sequences Using an Efficient Spark-Based DBSCAN Algorithm

Prediction of Thyroid Cancer Genes Using an Ensemble of Post Translational Modification, Semantic and Structural Similarity Based Clustering Results

DeConPPI: Deep Consensus-Based Prediction of Protein-Protein Interactions

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