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Dynamic regulation of transcriptional states by chromatin and transcription factors

Nature reviews. Genetics, 2014-02, Vol.15 (2), p.69-81

2014

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eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci

Molecular cell, 2013-09, Vol.51 (5), p.606-617

2013

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Early Th1 Cell Differentiation Is Marked by a Tfh Cell-like Transition

Immunity (Cambridge, Mass.), 2011-12, Vol.35 (6), p.919-931

2011

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DNase Footprint Signatures Are Dictated by Factor Dynamics and DNA Sequence

Molecular cell, 2014-10, Vol.56 (2), p.275-285

2014

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Transcription Factor AP1 Potentiates Chromatin Accessibility and Glucocorticoid Receptor Binding

Molecular cell, 2011-07, Vol.43 (1), p.145-155

2011

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Power-law behavior of transcription factor dynamics at the single-molecule level implies a continuum affinity model

Nucleic acids research, 2021-07, Vol.49 (12), p.6605-6620

2021

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Transcriptional and Chromatin Regulation during Fasting – The Genomic Era

Trends in endocrinology and metabolism, 2015-12, Vol.26 (12), p.699-710

2015

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Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation

Cell, 2013-12, Vol.155 (7), p.1507-1520

2013

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Dynamic Exchange at Regulatory Elements during Chromatin Remodeling Underlies Assisted Loading Mechanism

Cell, 2011-08, Vol.146 (4), p.544-554

2011

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Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions

Cell, 2016-04, Vol.165 (3), p.593-605

2016

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Transcription Dynamics

Molecular cell, 2009-09, Vol.35 (6), p.741-753

2009

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Mechanical Regulation of Transcription: Recent Advances

Trends in cell biology, 2021-06, Vol.31 (6), p.457-472

2021

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Transcription Factor Dynamics: One Molecule at a Time

Annual review of cell and developmental biology, 2023-10, Vol.39 (1), p.277-305

2023

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Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity

Cell reports (Cambridge), 2017-05, Vol.19 (8), p.1710-1722

2017

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Chromatin accessibility pre-determines glucocorticoid receptor binding patterns

Nature genetics, 2011-03, Vol.43 (3), p.264-268

2011

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Genome-wide binding potential and regulatory activity of the glucocorticoid receptor’s monomeric and dimeric forms

Nature communications, 2021-03, Vol.12 (1), p.1987-1987, Article 1987

2021

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Editorial overview: New insights and complexities for chromatin interacting proteins

Current opinion in structural biology, 2021-12, Vol.71, p.vi-viii

2021

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Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response

Genome research, 2017-03, Vol.27 (3), p.427-439

2017

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Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation

PloS one, 2016-02, Vol.11 (2), p.e0148619-e0148619

2016

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Long-range gene regulation in hormone-dependent cancer

Nature reviews. Cancer, 2023-10, Vol.23 (10), p.657-672

2023

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A Genome-wide Map of CTCF Multivalency Redefines the CTCF Code

Cell reports (Cambridge), 2013-05, Vol.3 (5), p.1678-1689

2013

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Glucocorticoid receptor quaternary structure drives chromatin occupancy and transcriptional outcome

Genome research, 2019-08, Vol.29 (8), p.1223-1234

2019

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Anti-Inflammatory Chromatinscape Suggests Alternative Mechanisms of Glucocorticoid Receptor Action

Immunity (Cambridge, Mass.), 2017-08, Vol.47 (2), p.298-309.e5

2017

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Transcription factors TCF-1 and GATA3 are key factors for the epigenetic priming of early innate lymphoid progenitors toward distinct cell fates

Immunity (Cambridge, Mass.), 2022-08, Vol.55 (8), p.1402-1413.e4

2022

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The Three Ds of Transcription Activation by Glucagon: Direct, Delayed, and Dynamic

Endocrinology (Philadelphia), 2018-01, Vol.159 (1), p.206-216

2018

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Dynamic regulation of transcriptional states by chromatin and transcription factors

eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci

Early Th1 Cell Differentiation Is Marked by a Tfh Cell-like Transition

DNase Footprint Signatures Are Dictated by Factor Dynamics and DNA Sequence

Transcription Factor AP1 Potentiates Chromatin Accessibility and Glucocorticoid Receptor Binding

Power-law behavior of transcription factor dynamics at the single-molecule level implies a continuum affinity model

Transcriptional and Chromatin Regulation during Fasting – The Genomic Era

Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation

Dynamic Exchange at Regulatory Elements during Chromatin Remodeling Underlies Assisted Loading Mechanism

Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions

Transcription Dynamics

Mechanical Regulation of Transcription: Recent Advances

Transcription Factor Dynamics: One Molecule at a Time

Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns

Genome-wide binding potential and regulatory activity of the glucocorticoid receptor’s monomeric and dimeric forms

Editorial overview: New insights and complexities for chromatin interacting proteins

Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response

Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation

Long-range gene regulation in hormone-dependent cancer

A Genome-wide Map of CTCF Multivalency Redefines the CTCF Code

Glucocorticoid receptor quaternary structure drives chromatin occupancy and transcriptional outcome

Anti-Inflammatory Chromatinscape Suggests Alternative Mechanisms of Glucocorticoid Receptor Action

Transcription factors TCF-1 and GATA3 are key factors for the epigenetic priming of early innate lymphoid progenitors toward distinct cell fates

The Three Ds of Transcription Activation by Glucagon: Direct, Delayed, and Dynamic

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