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High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells

Cell, 2014-06, Vol.157 (7), p.1724-1734

2014

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Releasing a preprint is associated with more attention and citations for the peer-reviewed article

eLife, 2019-12, Vol.8

2019

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Robust meta-analysis of gene expression using the elastic net

Nucleic acids research, 2015-07, Vol.43 (12), p.e79-e79

2015

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Eating breakfast and avoiding late-evening snacking sustains lipid oxidation

PLoS biology, 2020-02, Vol.18 (2), p.e3000622-e3000622

2020

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LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes

PloS one, 2023-12, Vol.18 (12), p.e0292089

2023

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Machine learning identifies a compact gene set for monitoring the circadian clock in human blood

Genome medicine, 2017-02, Vol.9 (1), p.19-19, Article 19

Hughey, Jacob J

2017

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Automated quality control and cell identification of droplet-based single-cell data using dropkick

Genome research, 2021-10, Vol.31 (10), p.1742-1752

2021

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Live-cell measurements of kinase activity in single cells using translocation reporters

Nature protocols, 2018-01, Vol.13 (1), p.155-169

2018

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The risks of using the chi-square periodogram to estimate the period of biological rhythms

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008567-e1008567

2021

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Evidence for widespread dysregulation of circadian clock progression in human cancer

PeerJ (San Francisco, CA), 2018-01, Vol.6, p.e4327-e4327, Article e4327

2018

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Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans

Journal of biological rhythms, 2016-12, Vol.31 (6), p.588-597

2016

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The seeker R package: simplified fetching and processing of transcriptome data

PeerJ (San Francisco, CA), 2022-11, Vol.10, p.e14372-e14372, Article e14372

2022

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Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

BMC genomics, 2019-11, Vol.20 (1), p.805-805, Article 805

2019

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pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

PeerJ (San Francisco, CA), 2021-03, Vol.9, p.e11071-e11071, Article e11071

2021

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Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease

BMC gastroenterology, 2017-12, Vol.17 (1), p.156-156, Article 156

2017

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The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants

Bioinformatics (Oxford, England), 2022-10, Vol.38 (21), p.4972-4974

2022

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Simphony: simulating large-scale, rhythmic data

PeerJ (San Francisco, CA), 2019-05, Vol.7, p.e6985-e6985, Article e6985

2019

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ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

Nucleic acids research, 2016-05, Vol.44 (8), p.e80-e80

2016

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LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Journal of biological rhythms, 2019-02, Vol.34 (1), p.5-18

2019

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Single-cell NF- B dynamics reveal digital activation and analogue information processing

Nature (London), 2010-07, Vol.466 (7303), p.267-271

2010

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Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records

Clinical chemistry (Baltimore, Md.), 2019-12, Vol.65 (12), p.1522-1531

2019

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Single-cell NF-κB dynamics reveal digital activation and analogue information processing

Nature (London), 2010-07, Vol.466 (7303), p.267-271

2010

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Sex Inclusion in Transcriptome Studies of Daily Rhythms

Journal of biological rhythms, 2023-02, Vol.38 (1), p.3-14

2023

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Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation

PloS one, 2013-01, Vol.8 (1), p.e53222-e53222

2013

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Population-level rhythms in human skin with implications for circadian medicine

Proceedings of the National Academy of Sciences - PNAS, 2018-11, Vol.115 (48), p.12313-12318

2018

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High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells

Releasing a preprint is associated with more attention and citations for the peer-reviewed article

Robust meta-analysis of gene expression using the elastic net

Eating breakfast and avoiding late-evening snacking sustains lipid oxidation

LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes

Machine learning identifies a compact gene set for monitoring the circadian clock in human blood

Automated quality control and cell identification of droplet-based single-cell data using dropkick

Live-cell measurements of kinase activity in single cells using translocation reporters

The risks of using the chi-square periodogram to estimate the period of biological rhythms

Evidence for widespread dysregulation of circadian clock progression in human cancer

Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans

The seeker R package: simplified fetching and processing of transcriptome data

Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease

The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants

Simphony: simulating large-scale, rhythmic data

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

Single-cell NF- B dynamics reveal digital activation and analogue information processing

Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records

Single-cell NF-κB dynamics reveal digital activation and analogue information processing

Sex Inclusion in Transcriptome Studies of Daily Rhythms

Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation

Population-level rhythms in human skin with implications for circadian medicine

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