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Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

Protein science, 2018-01, Vol.27 (1), p.159-171

Heymann, J. Bernard

2018

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Single particle reconstruction and validation using Bsoft for the map challenge

Journal of structural biology, 2018-10, Vol.204 (1), p.90-95

Heymann, J. Bernard

2018

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FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation

Nature communications, 2021-01, Vol.12 (1), p.42-42, Article 42

2021

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High resolution electron tomography and segmentation‐by‐modeling interpretation in Bsoft

Protein science, 2021-01, Vol.30 (1), p.44-59

Heymann, J. Bernard

2021

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Structural Studies of Bacteriophage Φ6 and Its Transformations during Its Life Cycle

Viruses, 2023-12, Vol.15 (12), p.2404

Heymann, J Bernard

2023

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One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions

Journal of structural biology, 2013-11, Vol.184 (2), p.226-236

2013

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The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage

Computer methods and programs in biomedicine, 2022-06, Vol.220, p.106799-106799, Article 106799

Heymann, J Bernard

2022

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The intratumoral microbiome: Characterization methods and functional impact

Cancer letters, 2021-12, Vol.522, p.63-79

2021

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HIV-1 Maturation Inhibitor Bevirimat Stabilizes the Immature Gag Lattice

Journal of Virology, 2011-02, Vol.85 (4), p.1420-1428

2011

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Map Challenge assessment: Fair comparison of single particle cryoEM reconstructions

Journal of structural biology, 2018-11, Vol.204 (2), p.360-367

Heymann, J. Bernard

2018

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Influenza Virus Pleiomorphy Characterized by Cryoelectron Tomography

Proceedings of the National Academy of Sciences - PNAS, 2006-12, Vol.103 (50), p.19123-19127

2006

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Bsoft: Image processing and molecular modeling for electron microscopy

Journal of structural biology, 2007, Vol.157 (1), p.3-18

2007

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Accounting for the Ewald Spheres in CryoEM Reconstructions and Their Relationship to 3D Fourier Transforms of Focal Series

Microscopy and microanalysis, 2023-07, Vol.29 (Supplement_1), p.1030-1031

2023

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A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress

The EMBO journal, 2014-09, Vol.33 (17), p.1896-1911

2014

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CO2 emission of Indonesian fires in 2015 estimated from satellite‐derived atmospheric CO2 concentrations

Geophysical research letters, 2017-02, Vol.44 (3), p.1537-1544

2017

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The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions

Journal of structural biology. X, 2023-01, Vol.7, p.100083, Article 100083

Heymann, J. Bernard

2023

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Bsoft: Image Processing for Structural Biology

Bio-protocol, 2022-04, Vol.12 (8), p.e4393-e4393

Heymann, Bernard J

2022

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The Role of TIM-1 and CD300a in Zika Virus Infection Investigated with Cell-Based Electrical Impedance

Biosensors (Basel), 2024-07, Vol.14 (8), p.362

2024

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Advances in understanding the molecular structure of retinoschisin while questions remain of biological function

Progress in retinal and eye research, 2023-07, Vol.95, p.101147-101147, Article 101147

2023

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Long-term analysis of carbon dioxide and methane column-averaged mole fractions retrieved from SCIAMACHY

Atmospheric chemistry and physics, 2011-03, Vol.11 (6), p.2863-2880

2011

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Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography

Science (American Association for the Advancement of Science), 2003-11, Vol.302 (5649), p.1396-1398

2003

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Local resolution estimates of cryoEM reconstructions

Current opinion in structural biology, 2020-10, Vol.64, p.74-78

2020

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Decreasing emissions of NOx relative to CO2 in East Asia inferred from satellite observations

Nature geoscience, 2014-11, Vol.7 (11), p.792-795

2014

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Anaerobutyricum soehngenii Reduces Hepatic Lipogenic Pathways and Increases Intestinal Gluconeogenic Gene Expression in Metabolic-Dysfunction-Associated Steatotic Liver Disease (MASLD) Mice

International journal of molecular sciences, 2024-03, Vol.25 (6), p.3481

2024

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Structural Changes in Influenza Virus at Low pH Characterized by Cryo-Electron Tomography

Journal of Virology, 2012-03, Vol.86 (6), p.2919-2929

2012

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Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

Single particle reconstruction and validation using Bsoft for the map challenge

FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation

High resolution electron tomography and segmentation‐by‐modeling interpretation in Bsoft

Structural Studies of Bacteriophage Φ6 and Its Transformations during Its Life Cycle

One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions

The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage

The intratumoral microbiome: Characterization methods and functional impact

HIV-1 Maturation Inhibitor Bevirimat Stabilizes the Immature Gag Lattice

Map Challenge assessment: Fair comparison of single particle cryoEM reconstructions

Influenza Virus Pleiomorphy Characterized by Cryoelectron Tomography

Bsoft: Image processing and molecular modeling for electron microscopy

Accounting for the Ewald Spheres in CryoEM Reconstructions and Their Relationship to 3D Fourier Transforms of Focal Series

A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress

CO2 emission of Indonesian fires in 2015 estimated from satellite‐derived atmospheric CO2 concentrations

The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions

Bsoft: Image Processing for Structural Biology

The Role of TIM-1 and CD300a in Zika Virus Infection Investigated with Cell-Based Electrical Impedance

Advances in understanding the molecular structure of retinoschisin while questions remain of biological function

Long-term analysis of carbon dioxide and methane column-averaged mole fractions retrieved from SCIAMACHY

Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography

Local resolution estimates of cryoEM reconstructions

Decreasing emissions of NOx relative to CO2 in East Asia inferred from satellite observations

Anaerobutyricum soehngenii Reduces Hepatic Lipogenic Pathways and Increases Intestinal Gluconeogenic Gene Expression in Metabolic-Dysfunction-Associated Steatotic Liver Disease (MASLD) Mice

Structural Changes in Influenza Virus at Low pH Characterized by Cryo-Electron Tomography

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