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CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data

Nature communications, 2020-01, Vol.11 (1), p.89-16, Article 89

2020

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Quantification of private information leakage from phenotype-genotype data: linking attacks

Nature methods, 2016-03, Vol.13 (3), p.251-256

2016

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Analysis of sensitive information leakage in functional genomics signal profiles through genomic deletions

Nature communications, 2018-06, Vol.9 (1), p.2453-10, Article 2453

2018

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TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences

BMC bioinformatics, 2011-04, Vol.12 (1), p.108-108, Article 108

2011

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FedGMMAT: Federated generalized linear mixed model association tests

PLoS computational biology, 2024-07, Vol.20 (7), p.e1012142

2024

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HDAC inhibitors elicit metabolic reprogramming by targeting super-enhancers in glioblastoma models

The Journal of clinical investigation, 2020-07, Vol.130 (7), p.3699-3716

2020

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SVAT: Secure outsourcing of variant annotation and genotype aggregation

BMC bioinformatics, 2022-10, Vol.23 (1), p.409-39, Article 409

2022

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Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers

Journal of neuro-oncology, 2023-06, Vol.163 (2), p.397-405

2023

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XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples

BMC genomics, 2022-12, Vol.23 (1), p.841-841, Article 841

2022

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SVFX: a machine learning framework to quantify the pathogenicity of structural variants

Genome Biology, 2020-11, Vol.21 (1), p.274-21, Article 274

2020

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COLLAGENE enables privacy-aware federated and collaborative genomic data analysis

Genome Biology, 2023-09, Vol.24 (1), p.204-38, Article 204

2023

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Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences

Cell, 2020-03, Vol.180 (5), p.915-927.e16

2020

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Integrated electrophysiological and genomic profiles of single cells reveal spiking tumor cells in human glioma

Cancer cell, 2024-10, Vol.42 (10), p.1713-1728.e6

2024

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Aggressive human MenG C meningiomas have a molecular counterpart in canines

Acta neuropathologica, 2024-06, Vol.147 (1), p.42, Article 42

2024

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An integrative ENCODE resource for cancer genomics

Nature communications, 2020-07, Vol.11 (1), p.3696-11, Article 3696

2020

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Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma

Acta neuropathologica, 2023-04, Vol.145 (4), p.501-503

2023

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Racial and Socioeconomic Disparities in Patients With Meningioma: A Retrospective Cohort Study

Neurosurgery, 2022-01, Vol.90 (1), p.114-123

2022

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Data Sanitization to Reduce Private Information Leakage from Functional Genomics

Cell, 2020-11, Vol.183 (4), p.905-917.e16

2020

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AlleleSeq: analysis of allele‐specific expression and binding in a network framework

Molecular systems biology, 2011-08, Vol.7 (1), p.522-n/a

2011

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Leveraging single-cell sequencing to classify and characterize tumor subgroups in bulk RNA-sequencing data

Journal of neuro-oncology, 2024-07, Vol.168 (3), p.515-524

2024

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Correction to: Leveraging single-cell sequencing to classify and characterize tumor subgroups in bulk RNA-sequencing data

Journal of neuro-oncology, 2024-07, Vol.168 (3), p.525-525

2024

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Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies

Science advances, 2022-02, Vol.8 (5), p.eabm6247

2022

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A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

Nature communications, 2016-04, Vol.7 (1), p.11101-11101, Article 11101

2016

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Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

BMC bioinformatics, 2007-04, Vol.8 (1), p.130-130, Article 130

2007

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Federated generalized linear mixed models for collaborative genome-wide association studies

iScience, 2023-08, Vol.26 (8), p.107227-107227, Article 107227

2023

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CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data

Quantification of private information leakage from phenotype-genotype data: linking attacks

Analysis of sensitive information leakage in functional genomics signal profiles through genomic deletions

TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences

FedGMMAT: Federated generalized linear mixed model association tests

HDAC inhibitors elicit metabolic reprogramming by targeting super-enhancers in glioblastoma models

SVAT: Secure outsourcing of variant annotation and genotype aggregation

Integrated clinical genomic analysis reveals xenobiotic metabolic genes are downregulated in meningiomas of current smokers

XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples

SVFX: a machine learning framework to quantify the pathogenicity of structural variants

COLLAGENE enables privacy-aware federated and collaborative genomic data analysis

Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences

Integrated electrophysiological and genomic profiles of single cells reveal spiking tumor cells in human glioma

Aggressive human MenG C meningiomas have a molecular counterpart in canines

An integrative ENCODE resource for cancer genomics

Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma

Racial and Socioeconomic Disparities in Patients With Meningioma: A Retrospective Cohort Study

Data Sanitization to Reduce Private Information Leakage from Functional Genomics

AlleleSeq: analysis of allele‐specific expression and binding in a network framework

Leveraging single-cell sequencing to classify and characterize tumor subgroups in bulk RNA-sequencing data

Correction to: Leveraging single-cell sequencing to classify and characterize tumor subgroups in bulk RNA-sequencing data

Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

Federated generalized linear mixed models for collaborative genome-wide association studies

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