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CHOPPI: A web tool for the analysis of immunogenicity risk from host cell proteins in CHO-based protein production

Biotechnology and bioengineering, 2014-11, Vol.111 (11), p.2170-2182

2014

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In Vivo Validation of Predicted and Conserved T Cell Epitopes in a Swine Influenza Model

PloS one, 2016-07, Vol.11 (7), p.e0159237-e0159237

2016

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Better Epitope Discovery, Precision Immune Engineering, and Accelerated Vaccine Design Using Immunoinformatics Tools

Frontiers in immunology, 2020-04, Vol.11, p.442-442

2020

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New Immunoinformatics Tools for Swine: Designing Epitope-Driven Vaccines, Predicting Vaccine Efficacy, and Making Vaccines on Demand

Frontiers in immunology, 2020-10, Vol.11, p.563362-563362

2020

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Individual and population-level variability in HLA-DR associated immunogenicity risk of biologics used for the treatment of rheumatoid arthritis

Frontiers in immunology, 2024-05, Vol.15, p.1377911-1377911

2024

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T cell epitope content comparison (EpiCC) analysis demonstrates a bivalent PCV2 vaccine has greater T cell epitope overlap with field strains than monovalent PCV2 vaccines

Veterinary immunology and immunopathology, 2020-05, Vol.223, p.110034-110034, Article 110034

2020

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A SARS-CoV-2 NSP7 homolog of a Treg epitope suppresses CD4+ and CD8+ T cell memory responses

Frontiers in immunology, 2023-11, Vol.14, p.1290688-1290688

2023

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In silico methods for immunogenicity risk assessment and human homology screening for therapeutic antibodies

mAbs, 2024, Vol.16 (1), p.2333729-2333729

2024

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Identification of immunodominant T cell epitopes induced by natural Zika virus infection

Frontiers in immunology, 2023-08, Vol.14, p.1247876-1247876

2023

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Morphological characterization of Mycobacterium tuberculosis in a MODS culture for an automatic diagnostics through pattern recognition

PloS one, 2013-12, Vol.8 (12), p.e82809-e82809

2013

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Pyrazinoic acid efflux rate in Mycobacterium tuberculosis is a better proxy of pyrazinamide resistance

Tuberculosis (Edinburgh, Scotland), 2012-01, Vol.92 (1), p.84-91

2012

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Immune escape and immune camouflage may reduce the efficacy of RTS,S vaccine in Malawi

Human vaccines & immunotherapeutics, 2020-02, Vol.16 (2), p.214-227

2020

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H1N1 G4 swine influenza T cell epitope analysis in swine and human vaccines and circulating strains uncovers potential risk to swine and humans

Influenza and other respiratory viruses, 2023-01, Vol.17 (1), p.e13058-n/a

2023

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Role of Metal Ions on the Activity of Mycobacterium tuberculosis Pyrazinamidase

The American journal of tropical medicine and hygiene, 2012-07, Vol.87 (1), p.153-161

2012

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Of [hamsters] and men: A new perspective on host cell proteins

Human vaccines & immunotherapeutics, 2012-09, Vol.8 (9), p.1172-1174

2012

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T‐cell epitope content comparison (EpiCC) of swine H1 influenza A virus hemagglutinin

Influenza and other respiratory viruses, 2017-11, Vol.11 (6), p.531-542

2017

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Smarter vaccine design will circumvent regulatory T cell-mediated evasion in chronic HIV and HCV infection

Frontiers in microbiology, 2014-10, Vol.5, p.502-502

2014

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Integrated assessment of predicted MHC binding and cross-conservation with self reveals patterns of viral camouflage

BMC bioinformatics, 2014, Vol.15 Suppl 4 (S4), p.S1-S1, Article S1

2014

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Development and validation of an epitope prediction tool for swine (PigMatrix) based on the pocket profile method

BMC bioinformatics, 2015-09, Vol.16 (1), p.290-290, Article 290

2015

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Highly conserved, non-human-like, and cross-reactive SARS-CoV-2 T cell epitopes for COVID-19 vaccine design and validation

npj vaccines, 2021-05, Vol.6 (1), p.71-71, Article 71

2021

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H7N9 T-cell epitopes that mimic human sequences are less immunogenic and may induce Treg-mediated tolerance

Human vaccines & immunotherapeutics, 2015-09, Vol.11 (9), p.2241-2252

2015

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The two-faced T cell epitope: Examining the host-microbe interface with JanusMatrix

Human vaccines & immunotherapeutics, 2013-07, Vol.9 (7), p.1577-1586

2013

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Immune camouflage: Relevance to vaccines and human immunology

Human vaccines & immunotherapeutics, 2014-12, Vol.10 (12), p.3570-3575

2014

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In silico Immunogenicity Assessment for Sequences Containing Unnatural Amino Acids: A Method Using Existing in silico Algorithm Infrastructure and a Vision for Future Enhancements

Frontiers in drug discovery, 2022, Vol.2

2022

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Cross-conservation of T-cell epitopes: Now even more relevant to (H7N9) influenza vaccine design

Human vaccines & immunotherapeutics, 2014-02, Vol.10 (2), p.256-262

2014

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CHOPPI: A web tool for the analysis of immunogenicity risk from host cell proteins in CHO-based protein production

In Vivo Validation of Predicted and Conserved T Cell Epitopes in a Swine Influenza Model

Better Epitope Discovery, Precision Immune Engineering, and Accelerated Vaccine Design Using Immunoinformatics Tools

New Immunoinformatics Tools for Swine: Designing Epitope-Driven Vaccines, Predicting Vaccine Efficacy, and Making Vaccines on Demand

Individual and population-level variability in HLA-DR associated immunogenicity risk of biologics used for the treatment of rheumatoid arthritis

T cell epitope content comparison (EpiCC) analysis demonstrates a bivalent PCV2 vaccine has greater T cell epitope overlap with field strains than monovalent PCV2 vaccines

A SARS-CoV-2 NSP7 homolog of a Treg epitope suppresses CD4+ and CD8+ T cell memory responses

In silico methods for immunogenicity risk assessment and human homology screening for therapeutic antibodies

Identification of immunodominant T cell epitopes induced by natural Zika virus infection

Morphological characterization of Mycobacterium tuberculosis in a MODS culture for an automatic diagnostics through pattern recognition

Pyrazinoic acid efflux rate in Mycobacterium tuberculosis is a better proxy of pyrazinamide resistance

Immune escape and immune camouflage may reduce the efficacy of RTS,S vaccine in Malawi

H1N1 G4 swine influenza T cell epitope analysis in swine and human vaccines and circulating strains uncovers potential risk to swine and humans

Role of Metal Ions on the Activity of Mycobacterium tuberculosis Pyrazinamidase

Of [hamsters] and men: A new perspective on host cell proteins

T‐cell epitope content comparison (EpiCC) of swine H1 influenza A virus hemagglutinin

Smarter vaccine design will circumvent regulatory T cell-mediated evasion in chronic HIV and HCV infection

Integrated assessment of predicted MHC binding and cross-conservation with self reveals patterns of viral camouflage

Development and validation of an epitope prediction tool for swine (PigMatrix) based on the pocket profile method

Highly conserved, non-human-like, and cross-reactive SARS-CoV-2 T cell epitopes for COVID-19 vaccine design and validation

H7N9 T-cell epitopes that mimic human sequences are less immunogenic and may induce Treg-mediated tolerance

The two-faced T cell epitope: Examining the host-microbe interface with JanusMatrix

Immune camouflage: Relevance to vaccines and human immunology

In silico Immunogenicity Assessment for Sequences Containing Unnatural Amino Acids: A Method Using Existing in silico Algorithm Infrastructure and a Vision for Future Enhancements

Cross-conservation of T-cell epitopes: Now even more relevant to (H7N9) influenza vaccine design

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