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Mslar: Microbial synthetic lethal and rescue database

PLoS computational biology, 2023-06, Vol.19 (6), p.e1011218-e1011218

2023

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GMMAD: a comprehensive database of human gut microbial metabolite associations with diseases

BMC genomics, 2023-08, Vol.24 (1), p.1-482, Article 482

2023

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Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny

PloS one, 2013-08, Vol.8 (8), p.e72343

2013

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Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties

Briefings in bioinformatics, 2017-05, Vol.18 (3), p.357-366

2017

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Vgas: A Viral Genome Annotation System

Frontiers in microbiology, 2019-02, Vol.10, p.184-184

2019

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Comprehensive review of the identification of essential genes using computational methods: focusing on feature implementation and assessment

Briefings in bioinformatics, 2020-01, Vol.21 (1), p.171-181

2020

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The GC Content as a Main Factor Shaping the Amino Acid Usage During Bacterial Evolution Process

Frontiers in microbiology, 2018-12, Vol.9, p.2948-2948

2018

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Geptop 2.0: An Updated, More Precise, and Faster Geptop Server for Identification of Prokaryotic Essential Genes

Frontiers in microbiology, 2019-06, Vol.10, p.1236-1236

2019

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Amino acid compositions contribute to the proteins’ evolution under the influence of their abundances and genomic GC content

Scientific reports, 2018-05, Vol.8 (1), p.7382-9, Article 7382

2018

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CEG: a database of essential gene clusters

BMC genomics, 2013-11, Vol.14 (1), p.769-769, Article 769

2013

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BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts

Frontiers in microbiology, 2021-01, Vol.12, p.593979-593979

2021

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Identifying Bacterial Essential Genes Based on a Feature-Integrated Method

IEEE/ACM transactions on computational biology and bioinformatics, 2019-07, Vol.16 (4), p.1274-1279

2019

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Comprehensive exploration of the enzymes catalysing oxygen‐involved reactions and COGs relevant to bacterial oxygen utilization

Environmental microbiology, 2018-10, Vol.20 (10), p.3836-3850

2018

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Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition

Protein and peptide letters, 2008-07, Vol.15 (7), p.739-744

2008

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T-G-A Deficiency Pattern in Protein-Coding Genes and Its Potential Reason

Frontiers in microbiology, 2022-05, Vol.13, p.847325-847325

2022

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Discovery of Drug Candidates for Specific Human Disease Based on Natural Products of Gut Microbes

Frontiers in microbiology, 2022-06, Vol.13, p.896740-896740

2022

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CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms

Database : the journal of biological databases and curation, 2020-12, Vol.2020

2020

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CasLocusAnno: a web‐based server for annotating cas loci and their corresponding (sub)types

FEBS letters, 2019-09, Vol.593 (18), p.2646-2654

2019

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Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition

Protein and peptide letters, 2011-01, Vol.18 (1), p.58-63

2011

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Reconstruction of the genome-scale metabolic network model of Sinorhizobium fredii CCBAU45436 for free-living and symbiotic states

Frontiers in bioengineering and biotechnology, 2024-03, Vol.12, p.1377334-1377334

2024

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Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages

PloS one, 2014-09, Vol.9 (9), p.e107319-e107319

2014

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iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC

International journal of biological sciences, 2018-01, Vol.14 (8), p.883-891

2018

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ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes

Nucleic acids research, 2003-03, Vol.31 (6), p.1780-1789

2003

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Laribacter hongkongensis anaerobic adaptation mediated by arginine metabolism is controlled by the cooperation of FNR and ArgR

Environmental microbiology, 2017-03, Vol.19 (3), p.1266-1280

2017

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Essentiality drives the orientation bias of bacterial genes in a continuous manner

Scientific reports, 2015-11, Vol.5 (1), p.16431-16431, Article 16431

2015

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Mslar: Microbial synthetic lethal and rescue database

GMMAD: a comprehensive database of human gut microbial metabolite associations with diseases

Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny

Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties

Vgas: A Viral Genome Annotation System

Comprehensive review of the identification of essential genes using computational methods: focusing on feature implementation and assessment

The GC Content as a Main Factor Shaping the Amino Acid Usage During Bacterial Evolution Process

Geptop 2.0: An Updated, More Precise, and Faster Geptop Server for Identification of Prokaryotic Essential Genes

Amino acid compositions contribute to the proteins’ evolution under the influence of their abundances and genomic GC content

CEG: a database of essential gene clusters

BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts

Identifying Bacterial Essential Genes Based on a Feature-Integrated Method

Comprehensive exploration of the enzymes catalysing oxygen‐involved reactions and COGs relevant to bacterial oxygen utilization

Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition

T-G-A Deficiency Pattern in Protein-Coding Genes and Its Potential Reason

Discovery of Drug Candidates for Specific Human Disease Based on Natural Products of Gut Microbes

CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms

CasLocusAnno: a web‐based server for annotating cas loci and their corresponding (sub)types

Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition

Reconstruction of the genome-scale metabolic network model of Sinorhizobium fredii CCBAU45436 for free-living and symbiotic states

Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages

iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC

ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes

Laribacter hongkongensis anaerobic adaptation mediated by arginine metabolism is controlled by the cooperation of FNR and ArgR

Essentiality drives the orientation bias of bacterial genes in a continuous manner

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