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Proton exit pathways surrounding the oxygen evolving complex of photosystem II

Biochimica et biophysica acta. Bioenergetics, 2021-08, Vol.1862 (8), p.148446-148446, Article 148446

2021

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Network analysis of a proposed exit pathway for protons to the P-side of cytochrome c oxidase

Biochimica et biophysica acta. Bioenergetics, 2018-10, Vol.1859 (10), p.997-1005

2018

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Toward understanding the S2-S3 transition in the Kok cycle of Photosystem II: Lessons from Sr-substituted structure

Inorganic chemistry communications, 2021-11, Vol.133 (C), p.108890, Article 108890

2021

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Efficiency of photosynthesis in a Chl d-utilizing cyanobacterium is comparable to or higher than that in Chl a-utilizing oxygenic species

Biochimica et biophysica acta, 2011-09, Vol.1807 (9), p.1231-1236

2011

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Two Cl Ions and a Glu Compete for a Helix Cage in the CLC Proton/Cl− Antiporter

Biophysical journal, 2017-09, Vol.113 (5), p.1025-1036

2017

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The aprotic electrochemistry of quinones

Biochimica et biophysica acta. Bioenergetics, 2022-08, Vol.1863 (6), p.148558-148558, Article 148558

2022

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Comparing Photosynthetic and Photovoltaic Efficiencies and Recognizing the Potential for Improvement

Science (American Association for the Advancement of Science), 2011-05, Vol.332 (6031), p.805-809

2011

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Assignment of chlorophyll d in the ChlD1 site of the electron transfer chain of far-red light acclimated photosystem II supported by MCCE binding calculations

Biochimica et biophysica acta. Bioenergetics, 2024-11, Vol.1865 (4), p.149496, Article 149496

2024

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Hydrogen bond network analysis reveals the pathway for the proton transfer in the E-channel of T. thermophilus Complex I

Biochimica et biophysica acta. Bioenergetics, 2020-10, Vol.1861 (10), p.148240-148240, Article 148240

2020

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Identifying the proton loading site cluster in the ba3 cytochrome c oxidase that loads and traps protons

Biochimica et biophysica acta. Bioenergetics, 2020-10, Vol.1861 (10), p.148239-148239, Article 148239

2020

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Identifying the proton loading site cluster in the ba cytochrome c oxidase that loads and traps protons

Biochimica et biophysica acta. Bioenergetics, 2020-10, Vol.1861 (10), p.148239, Article 148239

2020

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Calculated coupling of electron and proton transfer in the photosynthetic reaction center of Rhodopseudomonas viridis

Biophysical journal, 1996-06, Vol.70 (6), p.2469-2492

1996

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Affinity and activity of non-native quinones at the [Q.sub.B] site of bacterial photosynthetic reaction centers

Photosynthesis research, 2014-05, Vol.120 (1-2), p.181

2014

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X‑ray Free Electron Laser Radiation Damage through the S‑State Cycle of the Oxygen-Evolving Complex of Photosystem II

The journal of physical chemistry. B, 2017-10, Vol.121 (40), p.9382-9388

2017

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Molecular mechanisms for generating transmembrane proton gradients

Biochimica et biophysica acta, 2013-08, Vol.1827 (8-9), p.892-913

2013

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Thermodynamics of the S2-to-S3 state transition of the oxygen-evolving complex of photosystem II

Physical chemistry chemical physics : PCCP, 2019, Vol.21 (37), p.20840-20848

2019

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Using Multiconformation Continuum Electrostatics to Compare Chloride Binding Motifs in α-Amylase, Human Serum Albumin, and Omp32

Journal of molecular biology, 2009-04, Vol.387 (4), p.840-856

2009

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Multiconformation Continuum Electrostatics Analysis of the Effects of a Buried Asp Introduced Near Heme a in Rb. sphaeroides Cytochrome c Oxidase

Biochemistry (Easton), 2010-09, Vol.49 (37), p.8043-8052

2010

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Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations

Biochimica et biophysica acta, 2006-08, Vol.1757 (8), p.942-968

2006

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Are Acidic and Basic Groups in Buried Proteins Predicted to be Ionized?

Journal of molecular biology, 2005-05, Vol.348 (5), p.1283-1298

2005

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Calculated protein and proton motions coupled to electron transfer: electron transfer from Q(A-) to Q(B) in bacterial photosynthetic reaction centers

Biochemistry (Easton), 1999-06, Vol.38 (26), p.8253-8270

1999

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Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties

Biophysical journal, 1997-05, Vol.72 (5), p.2075-2093

1997

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Modeling the Unbinding Mechanism of the Neutral and Anionic Semi-Quinone from the QA Site of Bacterial Reaction Centers Using Steered Molecular Dynamics Simulations

Biophysical journal, 2011-02, Vol.100 (3), p.534a-534a

2011

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A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins

BBA - Bioenergetics, 2000-05, Vol.1458 (1), p.63-87

2000

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Volume contraction on photoexcitation of the reaction center from Rhodobacter sphaeroides R-26: internal probe of dielectrics

Biophysical journal, 1995, Vol.68 (1), p.275-280

1995

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Proton exit pathways surrounding the oxygen evolving complex of photosystem II

Network analysis of a proposed exit pathway for protons to the P-side of cytochrome c oxidase

Toward understanding the S2-S3 transition in the Kok cycle of Photosystem II: Lessons from Sr-substituted structure

Efficiency of photosynthesis in a Chl d-utilizing cyanobacterium is comparable to or higher than that in Chl a-utilizing oxygenic species

Two Cl Ions and a Glu Compete for a Helix Cage in the CLC Proton/Cl− Antiporter

The aprotic electrochemistry of quinones

Comparing Photosynthetic and Photovoltaic Efficiencies and Recognizing the Potential for Improvement

Assignment of chlorophyll d in the ChlD1 site of the electron transfer chain of far-red light acclimated photosystem II supported by MCCE binding calculations

Hydrogen bond network analysis reveals the pathway for the proton transfer in the E-channel of T. thermophilus Complex I

Identifying the proton loading site cluster in the ba3 cytochrome c oxidase that loads and traps protons

Identifying the proton loading site cluster in the ba cytochrome c oxidase that loads and traps protons

Calculated coupling of electron and proton transfer in the photosynthetic reaction center of Rhodopseudomonas viridis

Affinity and activity of non-native quinones at the [Q.sub.B] site of bacterial photosynthetic reaction centers

X‑ray Free Electron Laser Radiation Damage through the S‑State Cycle of the Oxygen-Evolving Complex of Photosystem II

Molecular mechanisms for generating transmembrane proton gradients

Thermodynamics of the S2-to-S3 state transition of the oxygen-evolving complex of photosystem II

Using Multiconformation Continuum Electrostatics to Compare Chloride Binding Motifs in α-Amylase, Human Serum Albumin, and Omp32

Multiconformation Continuum Electrostatics Analysis of the Effects of a Buried Asp Introduced Near Heme a in Rb. sphaeroides Cytochrome c Oxidase

Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations

Are Acidic and Basic Groups in Buried Proteins Predicted to be Ionized?

Calculated protein and proton motions coupled to electron transfer: electron transfer from Q(A-) to Q(B) in bacterial photosynthetic reaction centers

Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties

Modeling the Unbinding Mechanism of the Neutral and Anionic Semi-Quinone from the QA Site of Bacterial Reaction Centers Using Steered Molecular Dynamics Simulations

A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins

Volume contraction on photoexcitation of the reaction center from Rhodobacter sphaeroides R-26: internal probe of dielectrics

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