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Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system

Nature communications, 2016-01, Vol.7 (1), p.10239-10239, Article 10239

2016

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Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins

PloS one, 2015-10, Vol.10 (10), p.e0139731-e0139731

2015

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Phase Separation of C9orf72 Dipeptide Repeats Perturbs Stress Granule Dynamics

Molecular cell, 2017-03, Vol.65 (6), p.1044-1055.e5

2017

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Conserved residue clusters at protein-protein interfaces and their use in binding site identification

BMC bioinformatics, 2010-05, Vol.11 (1), p.286-286, Article 286

2010

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Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein–protein interactions

Bioinformatics, 2007-08, Vol.23 (15), p.1909-1918

2007

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Conservation and Relative Importance of Residues across Protein-Protein Interfaces

Proceedings of the National Academy of Sciences - PNAS, 2005-10, Vol.102 (43), p.15447-15452

2005

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The Balancing Act of Intrinsically Disordered Proteins: Enabling Functional Diversity while Minimizing Promiscuity

Journal of molecular biology, 2019-04, Vol.431 (8), p.1650-1670

2019

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SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models

BMC bioinformatics, 2023-07, Vol.24 (1), p.287-287, Article 287

2023

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Ensemble Methods Enable a New Definition for the Solution to Gas-Phase Transfer of Intrinsically Disordered Proteins

Journal of the American Chemical Society, 2015-11, Vol.137 (43), p.13807-13817

2015

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Degron masking outlines degronons, co-degrading functional modules in the proteome

Communications biology, 2022-05, Vol.5 (1), p.445-15, Article 445

2022

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Functional diversity and structural disorder in the human ubiquitination pathway

PloS one, 2013-05, Vol.8 (5), p.e65443-e65443

2013

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Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters

Nucleic acids research, 2012-08, Vol.40 (15), p.7150-7161

2012

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Computational approaches for inferring the functions of intrinsically disordered proteins

Frontiers in molecular biosciences, 2015-08, Vol.2, p.45-45

2015

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Side-chain rotamer transitions at protein-protein interfaces

Proteins, structure, function, and bioinformatics, 2010-11, Vol.78 (15), p.3219-3225

2010

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Dissection, residue conservation, and structural classification of protein‐DNA interfaces

Proteins, structure, function, and bioinformatics, 2009-02, Vol.74 (3), p.643-654

2009

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Design Principles Involving Protein Disorder Facilitate Specific Substrate Selection and Degradation by the Ubiquitin-Proteasome System

The Journal of biological chemistry, 2016-03, Vol.291 (13), p.6723-6731

2016

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Disordered Substrates of the 20S Proteasome Link Degradation with Phase Separation

Proteomics (Weinheim), 2018-11, Vol.18 (21-22), p.e1800276-n/a

2018

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SnapShot: Intrinsic Structural Disorder

Cell, 2015-05, Vol.161 (5), p.1230-1230.e1

2015

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Distance-Based Metrics for Comparing Conformational Ensembles of Intrinsically Disordered Proteins

Biophysical journal, 2020-06, Vol.118 (12), p.2952-2965

2020

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Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination

Proceedings of the National Academy of Sciences - PNAS, 2016-08, Vol.113 (32), p.E4639-E4647

2016

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Critical assessment of protein intrinsic disorder prediction

Nature methods, 2021-05, Vol.18 (5), p.472-481

2021

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Bioinformatics Approaches for Predicting Disordered Protein Motifs

Advances in experimental medicine and biology, 2015-01, Vol.870, p.291

2015

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Unique Physicochemical Patterns of Residues in Protein–Protein Interfaces

Journal of chemical information and modeling, 2018-10, Vol.58 (10), p.2164-2173

2018

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DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder

BMC bioinformatics, 2015-05, Vol.16 (1), p.153-153, Article 153

2015

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Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes

Journal of computer-aided molecular design, 2009-09, Vol.23 (9), p.645-654

2009

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Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system

Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins

Phase Separation of C9orf72 Dipeptide Repeats Perturbs Stress Granule Dynamics

Conserved residue clusters at protein-protein interfaces and their use in binding site identification

Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein–protein interactions

Conservation and Relative Importance of Residues across Protein-Protein Interfaces

The Balancing Act of Intrinsically Disordered Proteins: Enabling Functional Diversity while Minimizing Promiscuity

SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models

Ensemble Methods Enable a New Definition for the Solution to Gas-Phase Transfer of Intrinsically Disordered Proteins

Degron masking outlines degronons, co-degrading functional modules in the proteome

Functional diversity and structural disorder in the human ubiquitination pathway

Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters

Computational approaches for inferring the functions of intrinsically disordered proteins

Side-chain rotamer transitions at protein-protein interfaces

Dissection, residue conservation, and structural classification of protein‐DNA interfaces

Design Principles Involving Protein Disorder Facilitate Specific Substrate Selection and Degradation by the Ubiquitin-Proteasome System

Disordered Substrates of the 20S Proteasome Link Degradation with Phase Separation

SnapShot: Intrinsic Structural Disorder

Distance-Based Metrics for Comparing Conformational Ensembles of Intrinsically Disordered Proteins

Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination

Critical assessment of protein intrinsic disorder prediction

Bioinformatics Approaches for Predicting Disordered Protein Motifs

Unique Physicochemical Patterns of Residues in Protein–Protein Interfaces

DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder

Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes

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