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Molecular noise of innate immunity shapes bacteria-phage ecologies

PLoS computational biology, 2019-07, Vol.15 (7), p.e1007168-e1007168

2019

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Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity

Science (American Association for the Advancement of Science), 2017-04, Vol.356 (6335), p.311-315

2017

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Shaping bacterial population behavior through computer-interfaced control of individual cells

Nature communications, 2017-11, Vol.8 (1), p.1535-11, Article 1535

2017

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Bacterial Autoimmunity Due to a Restriction-Modification System

Current biology, 2016-02, Vol.26 (3), p.404-409

2016

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Leaky resistance and the conditions for the existence of lytic bacteriophage

PLoS biology, 2018-08, Vol.16 (8), p.e2005971-e2005971

2018

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Intrinsic limits to gene regulation by global crosstalk

Nature communications, 2016-08, Vol.7 (1), p.12307-12307, Article 12307

2016

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Combinatorial Synthesis of Genetic Networks

Science (American Association for the Advancement of Science), 2002-05, Vol.296 (5572), p.1466-1470

2002

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Statistical mechanics for metabolic networks during steady state growth

Nature communications, 2018-07, Vol.9 (1), p.2988-9, Article 2988

2018

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Adaptation dynamics between copy-number and point mutations

eLife, 2022-12, Vol.11

2022

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Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains

Journal of biotechnology, 2018-02, Vol.268, p.40-52

2018

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Effects of mutations in phage restriction sites during escape from restriction–modification

Biology letters (2005), 2017-12, Vol.13 (12), p.20170646-20170646

2017

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Epistatic Interactions in the Arabinose Cis-Regulatory Element

Molecular biology and evolution, 2016-03, Vol.33 (3), p.761-769

2016

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Bacterial flagella grow through an injection-diffusion mechanism

eLife, 2017-03, Vol.6

2017

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Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection

eLife, 2017-07, Vol.6

2017

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Monitoring lineages of growing and dividing bacteria reveals an inducible memory of mar operon expression

Frontiers in microbiology, 2023-06, Vol.14, p.1049255-1049255

2023

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An Effective Feedback Loop between Cell-Cell Contact Duration and Morphogen Signaling Determines Cell Fate

Developmental cell, 2017-10, Vol.43 (2), p.198-211.e12

2017

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Uncovering cis regulatory codes using synthetic promoter shuffling

PloS one, 2008-04, Vol.3 (4), p.e2030-e2030

2008

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Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity

Nature ecology & evolution, 2018-02, Vol.2 (2), p.359-366

2018

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Regulatory network structure determines patterns of intermolecular epistasis

eLife, 2017-11, Vol.6

2017

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On the mechanistic nature of epistasis in a canonical cis -regulatory element

eLife, 2017-05, Vol.6

2017

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Predicting bacterial promoter function and evolution from random sequences

eLife, 2022-01, Vol.11

2022

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Noise Underlies Switching Behavior of the Bacterial Flagellum

Biophysical journal, 2011-11, Vol.101 (10), p.2336-2340

2011

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Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14

eLife, 2022-07, Vol.11

2022

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Minimally invasive determination of mRNA concentration in single living bacteria

Nucleic acids research, 2008-07, Vol.36 (12), p.e73-e73

2008

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Local genetic context shapes the function of a gene regulatory network

eLife, 2021-03, Vol.10

2021

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Molecular noise of innate immunity shapes bacteria-phage ecologies

Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity

Shaping bacterial population behavior through computer-interfaced control of individual cells

Bacterial Autoimmunity Due to a Restriction-Modification System

Leaky resistance and the conditions for the existence of lytic bacteriophage

Intrinsic limits to gene regulation by global crosstalk

Combinatorial Synthesis of Genetic Networks

Statistical mechanics for metabolic networks during steady state growth

Adaptation dynamics between copy-number and point mutations

Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains

Effects of mutations in phage restriction sites during escape from restriction–modification

Epistatic Interactions in the Arabinose Cis-Regulatory Element

Bacterial flagella grow through an injection-diffusion mechanism

Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection

Monitoring lineages of growing and dividing bacteria reveals an inducible memory of mar operon expression

An Effective Feedback Loop between Cell-Cell Contact Duration and Morphogen Signaling Determines Cell Fate

Uncovering cis regulatory codes using synthetic promoter shuffling

Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity

Regulatory network structure determines patterns of intermolecular epistasis

On the mechanistic nature of epistasis in a canonical cis -regulatory element

Predicting bacterial promoter function and evolution from random sequences

Noise Underlies Switching Behavior of the Bacterial Flagellum

Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14

Minimally invasive determination of mRNA concentration in single living bacteria

Local genetic context shapes the function of a gene regulatory network

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