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A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation

Genome research, 2016-08, Vol.26 (8), p.1145

2016

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PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing

Nucleic acids research, 2020-01, Vol.48 (D1), p.D174

2020

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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

Genome Biology, 2015-07, Vol.16 (1), p.150-150, Article 150

2015

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ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

Genome research, 2014-05, Vol.24 (5), p.869

2014

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Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC

Genome Biology, 2018-03, Vol.19 (1), p.44-44, Article 44

2018

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Alternative cleavage and polyadenylation in health and disease

Nature reviews. Genetics, 2019-10, Vol.20 (10), p.599

2019

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MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer

Nature communications, 2024-05, Vol.15 (1), p.4110-4110, Article 4110

2024

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Investigating the Human Host—ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox

Viruses, 2022-06, Vol.14 (7), p.1436-16

2022

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Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

Communications biology, 2021-05, Vol.4 (1), p.590-590, Article 590

2021

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TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition

Biology direct, 2017-04, Vol.12 (1), p.8-8, Article 8

2017

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Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells

Nature communications, 2014-11, Vol.5 (1), p.5465-5465, Article 5465

2014

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Reply to 'A different perspective on alternative cleavage and polyadenylation'

Nature reviews. Genetics, 2020-01, Vol.21 (1), p.63

2020

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scTEA-db: a comprehensive database of novel terminal exon isoforms identified from human single cell transcriptomes

Nucleic acids research, 2024-01, Vol.52 (D1), p.D1018

2024

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Analysis of 10,478 cancer genomes identifies candidate driver genes and opportunities for precision oncology

Nature genetics, 2024-06

2024

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Modulation of epigenetic regulators and cell fate decisions by miRNAs

Epigenomics, 2013-12, Vol.5 (6), p.671-683

2013

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Single‐cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction

Molecular systems biology, 2018-08, Vol.14 (8), p.e8266-n/a

2018

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Whole genome sequencing refines stratification and therapy of patients with clear cell renal cell carcinoma

Nature communications, 2024-07, Vol.15 (1), p.5935, Article 5935

2024

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Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways

Nucleic acids research, 2014-08, Vol.42 (14), p.9313

2014

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3' End Sequencing Library Preparation with A-seq2

Journal of visualized experiments, 2017-10 (128)

2017

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Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation

The Journal of clinical investigation, 2014-04, Vol.124 (4), p.1568-1581

2014

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Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

Scientific reports, 2016-10, Vol.6 (1), p.34589, Article 34589

2016

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Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry

Methods (San Diego, Calif.), 2015-09, Vol.85, p.100-107

2015

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A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC

Alternative cleavage and polyadenylation in health and disease

MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer

Investigating the Human Host—ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox

Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition

The International Virus Bioinformatics Meeting 2022

Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells

Reply to 'A different perspective on alternative cleavage and polyadenylation'

scTEA-db: a comprehensive database of novel terminal exon isoforms identified from human single cell transcriptomes

Analysis of 10,478 cancer genomes identifies candidate driver genes and opportunities for precision oncology

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor

Modulation of epigenetic regulators and cell fate decisions by miRNAs

Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes

Single‐cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction

Whole genome sequencing refines stratification and therapy of patients with clear cell renal cell carcinoma

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways

3' End Sequencing Library Preparation with A-seq2

Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry

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