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Current challenges and best-practice protocols for microbiome analysis

Briefings in bioinformatics, 2021-01, Vol.22 (1), p.178-193

2021

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The rate and potential relevance of new mutations in a colonizing plant lineage

PLoS genetics, 2018-02, Vol.14 (2), p.e1007155-e1007155

2018

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The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity

Human mutation, 2015-05, Vol.36 (5), p.513-523

2015

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Accurate machine learning-based germination detection, prediction and quality assessment of three grain crops

Plant methods, 2020-12, Vol.16 (1), p.157-157, Article 157

2020

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AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana

Nucleic acids research, 2020-01, Vol.48 (D1), p.D1063

2020

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The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog

Nucleic acids research, 2018-01, Vol.46 (D1), p.D1150

2018

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easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies

The Plant cell, 2017-01, Vol.29 (1), p.5-19

2017

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Improved weed segmentation in UAV imagery of sorghum fields with a combined deblurring segmentation model

Plant methods, 2023-08, Vol.19 (1), p.1-87, Article 87

2023

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Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward

Computational and structural biotechnology journal, 2022-01, Vol.20, p.2699-2712

2022

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A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species

Frontiers in plant science, 2022-11, Vol.13, p.932512-932512

2022

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Manually annotated and curated Dataset of diverse Weed Species in Maize and Sorghum for Computer Vision

Scientific data, 2024-01, Vol.11 (1), p.109-109, Article 109

2024

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HeliantHOME, a public and centralized database of phenotypic sunflower data

Scientific data, 2022-11, Vol.9 (1), p.735-9, Article 735

2022

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Exosome-Based Detection of EGFR T790M in Plasma from Non-Small Cell Lung Cancer Patients

Clinical cancer research, 2018-06, Vol.24 (12), p.2944-2950

2018

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Network-guided search for genetic heterogeneity between gene pairs

Bioinformatics (Oxford, England), 2021-04, Vol.37 (1), p.57-65

2021

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Efficient permutation-based genome-wide association studies for normal and skewed phenotypic distributions

Bioinformatics, 2022-09, Vol.38 (Supplement_2), p.ii5-ii12

2022

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Automated synthesis of steady-state continuous processes using reinforcement learning

Frontiers of Chemical Science and Engineering, 2022-02, Vol.16 (2), p.288-302

2022

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Combining machine learning and optimization for the operational patient-bed assignment problem

Health care management science, 2023-12, Vol.26 (4), p.785-806

2023

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easyPheno: An easy-to-use and easy-to-extend Python framework for phenotype prediction using Bayesian optimization

Bioinformatics advances, 2023, Vol.3 (1), p.vbad035-vbad035

2023

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The AIMe registry for artificial intelligence in biomedical research

Nature methods, 2021-10, Vol.18 (10), p.1128

2021

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Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids

Proceedings of the National Academy of Sciences - PNAS, 2016-11, Vol.113 (46), p.E7317-E7326

2016

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ForeTiS: A comprehensive time series forecasting framework in Python

Machine learning with applications, 2023-06, Vol.12, p.100467, Article 100467

2023

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Exosome-based detection of activating and resistance EGFR mutations from plasma of non-small cell lung cancer patients

Oncotarget, 2019-04, Vol.10 (30), p.2911-2920

2019

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Methods and Tools in Genome-wide Association Studies

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1819, p.93

2018

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Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages

Molecular biology and evolution, 2016-09, Vol.33 (9), p.2257-2272

2016

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Genome-wide detection of intervals of genetic heterogeneity associated with complex traits

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i240-i249

2015

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Current challenges and best-practice protocols for microbiome analysis

The rate and potential relevance of new mutations in a colonizing plant lineage

The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity

Accurate machine learning-based germination detection, prediction and quality assessment of three grain crops

AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog

easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies

Improved weed segmentation in UAV imagery of sorghum fields with a combined deblurring segmentation model

Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward

A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species

Manually annotated and curated Dataset of diverse Weed Species in Maize and Sorghum for Computer Vision

HeliantHOME, a public and centralized database of phenotypic sunflower data

Exosome-Based Detection of EGFR T790M in Plasma from Non-Small Cell Lung Cancer Patients

Network-guided search for genetic heterogeneity between gene pairs

Efficient permutation-based genome-wide association studies for normal and skewed phenotypic distributions

Automated synthesis of steady-state continuous processes using reinforcement learning

Combining machine learning and optimization for the operational patient-bed assignment problem

easyPheno: An easy-to-use and easy-to-extend Python framework for phenotype prediction using Bayesian optimization

The AIMe registry for artificial intelligence in biomedical research

Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids

ForeTiS: A comprehensive time series forecasting framework in Python

Exosome-based detection of activating and resistance EGFR mutations from plasma of non-small cell lung cancer patients

Methods and Tools in Genome-wide Association Studies

Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages

Genome-wide detection of intervals of genetic heterogeneity associated with complex traits

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