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Emergence of mcr-9.1 in Extended-Spectrum-β-Lactamase-Producing Clinical Enterobacteriaceae in Pretoria, South Africa: Global Evolutionary Phylogenomics, Resistome, and Mobilome

mSystems, 2020-05, Vol.5 (3)

2020

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The effect of non-linear signal in classification problems using gene expression

PLoS computational biology, 2023-03, Vol.19 (3), p.e1010984

2023

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Constructing knowledge graphs and their biomedical applications

Computational and structural biotechnology journal, 2020-01, Vol.18, p.1414-1428

2020

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Reproducibility of computational workflows is automated using continuous analysis

Nature biotechnology, 2017-04, Vol.35 (4), p.342-346

2017

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Responsible, practical genomic data sharing that accelerates research

Nature reviews. Genetics, 2020-10, Vol.21 (10), p.615-629

2020

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Incorporating biological structure into machine learning models in biomedicine

Current opinion in biotechnology, 2020-06, Vol.63, p.126-134

2020

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A publishing infrastructure for Artificial Intelligence (AI)-assisted academic authoring

Journal of the American Medical Informatics Association : JAMIA, 2024-06, Vol.31 (9), p.2103-2113

2024

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Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2018, Vol.23, p.80

2018

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FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

mSystems, 2021-01, Vol.6 (1)

2021

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Failure to replicate a genetic association may provide important clues about genetic architecture

PloS one, 2009-06, Vol.4 (6), p.e5639-e5639

2009

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Semi-supervised learning of the electronic health record for phenotype stratification

Journal of biomedical informatics, 2016-12, Vol.64, p.168-178

2016

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Reproducibility standards for machine learning in the life sciences

Nature methods, 2021-10, Vol.18 (10), p.1132-1135

2021

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Opportunities and obstacles for deep learning in biology and medicine

Journal of the Royal Society interface, 2018-04, Vol.15 (141), p.20170387

2018

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Examining linguistic shifts between preprints and publications

PLoS biology, 2022-02, Vol.20 (2), p.e3001470-e3001470

2022

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Big Data Bioinformatics

Journal of cellular physiology, 2014-12, Vol.229 (12), p.1896-1900

2014

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Privacy-Preserving Generative Deep Neural Networks Support Clinical Data Sharing

Circulation Cardiovascular quality and outcomes, 2019-07, Vol.12 (7), p.e005122-e005122

2019

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Show me the models

Nature biotechnology, 2019-06, Vol.37 (6), p.623-625

Greene, Casey S.

2019

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Open collaborative writing with Manubot

PLoS computational biology, 2019-06, Vol.15 (6), p.e1007128

2019

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miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009290-e1009290

2021

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Enter the Matrix: Factorization Uncovers Knowledge from Omics

Trends in genetics, 2018-10, Vol.34 (10), p.790-805

2018

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Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations

Genome Biology, 2020-05, Vol.21 (1), p.109-27, Article 109

2020

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Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms

PLoS computational biology, 2015-01, Vol.11 (1), p.e1004005-e1004005

2015

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Understanding multicellular function and disease with human tissue-specific networks

Nature genetics, 2015-06, Vol.47 (6), p.569-576

2015

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Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery

Briefings in bioinformatics, 2016-01, Vol.17 (1), p.33-42

2016

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Analysis of science journalism reveals gender and regional disparities in coverage

eLife, 2024-05, Vol.12

2024

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Emergence of mcr-9.1 in Extended-Spectrum-β-Lactamase-Producing Clinical Enterobacteriaceae in Pretoria, South Africa: Global Evolutionary Phylogenomics, Resistome, and Mobilome

The effect of non-linear signal in classification problems using gene expression

Constructing knowledge graphs and their biomedical applications

Reproducibility of computational workflows is automated using continuous analysis

Responsible, practical genomic data sharing that accelerates research

Incorporating biological structure into machine learning models in biomedicine

A publishing infrastructure for Artificial Intelligence (AI)-assisted academic authoring

Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

Failure to replicate a genetic association may provide important clues about genetic architecture

Semi-supervised learning of the electronic health record for phenotype stratification

Reproducibility standards for machine learning in the life sciences

Opportunities and obstacles for deep learning in biology and medicine

Examining linguistic shifts between preprints and publications

Big Data Bioinformatics

Privacy-Preserving Generative Deep Neural Networks Support Clinical Data Sharing

Show me the models

Open collaborative writing with Manubot

miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data

Enter the Matrix: Factorization Uncovers Knowledge from Omics

Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations

Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms

Understanding multicellular function and disease with human tissue-specific networks

Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery

Analysis of science journalism reveals gender and regional disparities in coverage

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