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Deconstructing the polymerase chain reaction: understanding and correcting bias associated with primer degeneracies and primer-template mismatches

PloS one, 2015-05, Vol.10 (5), p.e0128122-e0128122

2015

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Chronic oral application of a periodontal pathogen results in brain inflammation, neurodegeneration and amyloid beta production in wild type mice

PloS one, 2018-10, Vol.13 (10), p.e0204941-e0204941

2018

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Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

Environmental microbiology, 2012-02, Vol.14 (2), p.285-290

2012

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Colonic bacterial composition in Parkinson's disease

Movement disorders, 2015-09, Vol.30 (10), p.1351-1360

2015

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Circadian disorganization alters intestinal microbiota

PloS one, 2014-05, Vol.9 (5), p.e97500

2014

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Niche and host-associated functional signatures of the root surface microbiome

Nature communications, 2014-09, Vol.5 (1), p.4950-4950, Article 4950

2014

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Role of TLR4 in the gut-brain axis in Parkinson's disease: a translational study from men to mice

Gut, 2019-05, Vol.68 (5), p.829-843

2019

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Burn Injury Alters the Intestinal Microbiome and Increases Gut Permeability and Bacterial Translocation

PloS one, 2015-07, Vol.10 (7), p.e0129996-e0129996

2015

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Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

PloS one, 2023-01, Vol.18 (1), p.e0280293-e0280293

2023

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Chronic stress-induced gut dysfunction exacerbates Parkinson's disease phenotype and pathology in a rotenone-induced mouse model of Parkinson's disease

Neurobiology of disease, 2020-02, Vol.135, p.104352, Article 104352

2020

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Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

Applied and Environmental Microbiology, 2011-11, Vol.77 (22), p.7962-7974

2011

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Gut microbiota varies by opioid use, circulating leptin and oxytocin in African American men with diabetes and high burden of chronic disease

PloS one, 2018-03, Vol.13 (3), p.e0194171

2018

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Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

Nature communications, 2021-03, Vol.12 (1), p.1628-25, Article 1628

2021

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Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model

PloS one, 2019-08, Vol.14 (8), p.e0221828-e0221828

2019

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APOE genetics influence murine gut microbiome

Scientific reports, 2022-02, Vol.12 (1), p.1906-1906, Article 1906

2022

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Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments

Soil biology & biochemistry, 2011-02, Vol.43 (2), p.385-392

2011

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Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight

Microbiome, 2019-08, Vol.7 (1), p.113-18, Article 113

2019

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The Circadian Clock Mutation Promotes Intestinal Dysbiosis

Alcoholism, clinical and experimental research, 2016-02, Vol.40 (2), p.335-347

2016

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An open label, non-randomized study assessing a prebiotic fiber intervention in a small cohort of Parkinson’s disease participants

Nature communications, 2023-02, Vol.14 (1), p.926-926, Article 926

2023

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Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice

Scientific reports, 2018-03, Vol.8 (1), p.3829-15, Article 3829

2018

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Dietary Fiber Treatment Corrects the Composition of Gut Microbiota, Promotes SCFA Production, and Suppresses Colon Carcinogenesis

Genes, 2018-02, Vol.9 (2), p.102

2018

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Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study

The FASEB journal, 2018-04, Vol.32 (4), p.2060-2072

2018

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Microglia, inflammation and gut microbiota responses in a progressive monkey model of Parkinson's disease: A case series

Neurobiology of disease, 2020-10, Vol.144, p.105027-105027, Article 105027

2020

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Effect of progestin-based contraceptives on HIV-associated vaginal immune biomarkers and microbiome in adolescent girls

PloS one, 2024-07, Vol.19 (7), p.e0306237

2024

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The Negative Effects of Feces-Associated Microorganisms on the Fitness of the Stored Product Mite Tyrophagus putrescentiae

Frontiers in microbiology, 2022-03, Vol.13, p.756286-756286

2022

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Deconstructing the polymerase chain reaction: understanding and correcting bias associated with primer degeneracies and primer-template mismatches

Chronic oral application of a periodontal pathogen results in brain inflammation, neurodegeneration and amyloid beta production in wild type mice

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

Colonic bacterial composition in Parkinson's disease

Circadian disorganization alters intestinal microbiota

Niche and host-associated functional signatures of the root surface microbiome

Role of TLR4 in the gut-brain axis in Parkinson's disease: a translational study from men to mice

Burn Injury Alters the Intestinal Microbiome and Increases Gut Permeability and Bacterial Translocation

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Chronic stress-induced gut dysfunction exacerbates Parkinson's disease phenotype and pathology in a rotenone-induced mouse model of Parkinson's disease

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

Gut microbiota varies by opioid use, circulating leptin and oxytocin in African American men with diabetes and high burden of chronic disease

Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model

APOE genetics influence murine gut microbiome

Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments

Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight

The Circadian Clock Mutation Promotes Intestinal Dysbiosis

An open label, non-randomized study assessing a prebiotic fiber intervention in a small cohort of Parkinson’s disease participants

Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice

Dietary Fiber Treatment Corrects the Composition of Gut Microbiota, Promotes SCFA Production, and Suppresses Colon Carcinogenesis

Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study

Microglia, inflammation and gut microbiota responses in a progressive monkey model of Parkinson's disease: A case series

Effect of progestin-based contraceptives on HIV-associated vaginal immune biomarkers and microbiome in adolescent girls

The Negative Effects of Feces-Associated Microorganisms on the Fitness of the Stored Product Mite Tyrophagus putrescentiae

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