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Deciphering the triad of infection, immunity and pathology

eLife, 2021-09, Vol.10

Graw, Frederik

2021

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Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures

Nature communications, 2019-05, Vol.10 (1), p.2144-18, Article 2144

2019

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Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium

PLoS computational biology, 2023-08, Vol.19 (8), p.e1011356-e1011356

2023

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OutbreakFlow: Model-based Bayesian inference of disease outbreak dynamics with invertible neural networks and its application to the COVID-19 pandemics in Germany

PLoS computational biology, 2021-10, Vol.17 (10), p.e1009472-e1009472

2021

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A wall-time minimizing parallelization strategy for approximate Bayesian computation

PloS one, 2024-02, Vol.19 (2), p.e0294015-e0294015

2024

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Modeling Viral Spread

Annual review of virology, 2016-09, Vol.3 (1), p.555-572

2016

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Influence of circadian clocks on adaptive immunity and vaccination responses

Nature communications, 2023-01, Vol.14 (1), p.476-476, Article 476

2023

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Multiscale modeling of virus replication and spread

FEBS letters, 2016-07, Vol.590 (13), p.1972-1986

2016

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FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics

PLoS computational biology, 2019-08, Vol.15 (8), p.e1007230-e1007230

2019

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Extended methods for spatial cell classification with DBSCAN-CellX

Scientific reports, 2023-11, Vol.13 (1), p.18868-18868, Article 18868

2023

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The population context is a driver of the heterogeneous response of epithelial cells to interferons

Molecular systems biology, 2024-03, Vol.20 (3), p.242-275

2024

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More or less-On the influence of labelling strategies to infer cell population dynamics

PloS one, 2017-10, Vol.12 (10), p.e0185523-e0185523

2017

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Investigating the Dynamics of MCMV-Specific CD8 + T Cell Responses in Individual Hosts

Frontiers in immunology, 2019-06, Vol.10, p.1358-1358

2019

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Use of Laser Capture Microdissection to Map Hepatitis C Virus–Positive Hepatocytes in Human Liver

Gastroenterology (New York, N.Y. 1943), 2013-12, Vol.145 (6), p.1404-1413.e10

2013

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Quantification of Hepatitis C Virus Cell-to-Cell Spread Using a Stochastic Modeling Approach

Journal of virology, 2015-07, Vol.89 (13), p.6551-6561

2015

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HCV Spread Kinetics Reveal Varying Contributions of Transmission Modes to Infection Dynamics

Viruses, 2021-07, Vol.13 (7), p.1308

2021

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A Hepatitis C virus genotype 1b post-transplant isolate with high replication efficiency in cell culture and its adaptation to infectious virus production in vitro and in vivo

PLoS pathogens, 2022-06, Vol.18 (6), p.e1010472

2022

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Accounting for Space—Quantification of Cell-To-Cell Transmission Kinetics Using Virus Dynamics Models

Viruses, 2018-04, Vol.10 (4), p.200

2018

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Estimating the In Vivo Killing Efficacy of Cytotoxic T Lymphocytes across Different Peptide-MHC Complex Densities

PLoS computational biology, 2015-05, Vol.11 (5), p.e1004178-e1004178

2015

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Examining the Reticulocyte Preference of Two Plasmodium berghei Strains during Blood-Stage Malaria Infection

Frontiers in microbiology, 2018-02, Vol.9, p.166-166

2018

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Influence of the fibroblastic reticular network on cell-cell interactions in lymphoid organs

PLoS computational biology, 2012-03, Vol.8 (3), p.e1002436-e1002436

2012

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Inferring viral dynamics in chronically HCV infected patients from the spatial distribution of infected hepatocytes

PLoS computational biology, 2014-11, Vol.10 (11), p.e1003934-e1003934

2014

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Varying Immunizations With Plasmodium Radiation-Attenuated Sporozoites Alter Tissue-Specific CD8 + T Cell Dynamics

Frontiers in immunology, 2018-05, Vol.9, p.1137-1137

2018

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Modeling Favipiravir Antiviral Efficacy Against Emerging Viruses: From Animal Studies to Clinical Trials

CPT: pharmacometrics and systems pharmacology, 2020-05, Vol.9 (5), p.258-271

2020

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Environmental Restrictions: A New Concept Governing HIV-1 Spread Emerging from Integrated Experimental-Computational Analysis of Tissue-Like 3D Cultures

Cells (Basel, Switzerland), 2020-04, Vol.9 (5), p.1112

2020

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Deciphering the triad of infection, immunity and pathology

Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures

Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium

OutbreakFlow: Model-based Bayesian inference of disease outbreak dynamics with invertible neural networks and its application to the COVID-19 pandemics in Germany

A wall-time minimizing parallelization strategy for approximate Bayesian computation

Modeling Viral Spread

Influence of circadian clocks on adaptive immunity and vaccination responses

Multiscale modeling of virus replication and spread

FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics

Extended methods for spatial cell classification with DBSCAN-CellX

The population context is a driver of the heterogeneous response of epithelial cells to interferons

More or less-On the influence of labelling strategies to infer cell population dynamics

Investigating the Dynamics of MCMV-Specific CD8 + T Cell Responses in Individual Hosts

Use of Laser Capture Microdissection to Map Hepatitis C Virus–Positive Hepatocytes in Human Liver

Quantification of Hepatitis C Virus Cell-to-Cell Spread Using a Stochastic Modeling Approach

HCV Spread Kinetics Reveal Varying Contributions of Transmission Modes to Infection Dynamics

A Hepatitis C virus genotype 1b post-transplant isolate with high replication efficiency in cell culture and its adaptation to infectious virus production in vitro and in vivo

Accounting for Space—Quantification of Cell-To-Cell Transmission Kinetics Using Virus Dynamics Models

Estimating the In Vivo Killing Efficacy of Cytotoxic T Lymphocytes across Different Peptide-MHC Complex Densities

Examining the Reticulocyte Preference of Two Plasmodium berghei Strains during Blood-Stage Malaria Infection

Influence of the fibroblastic reticular network on cell-cell interactions in lymphoid organs

Inferring viral dynamics in chronically HCV infected patients from the spatial distribution of infected hepatocytes

Varying Immunizations With Plasmodium Radiation-Attenuated Sporozoites Alter Tissue-Specific CD8 + T Cell Dynamics

Modeling Favipiravir Antiviral Efficacy Against Emerging Viruses: From Animal Studies to Clinical Trials

Environmental Restrictions: A New Concept Governing HIV-1 Spread Emerging from Integrated Experimental-Computational Analysis of Tissue-Like 3D Cultures

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